AT5G03240 (UBQ3)

Aliases : UBQ3

Description : polyubiquitin 3

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G03240
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
Adi_g129218	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g18351	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g24699	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Als_g45146	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Als_g59298	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12224	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g43648	RUB1, ATRUB1, NEDD8	RUB ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.27G039400.1	UBQ3, Ceric.27G039400	UBQ ubiquitin-fold protein & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.31G025400.1	UBQ14, Ceric.31G025400	UBQ ubiquitin-fold protein & original description:...	0.01	OrthoFinder output from all 47 species
Dcu_g08482	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g29246	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g29687	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01023461001	UBQ14	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
LOC_Os02g06640.1	UBQ10, LOC_Os02g06640	ubiquitin-fold protein (UBQ)	0.05	OrthoFinder output from all 47 species
Len_g49043	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g19694	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g22941	UBQ11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g27408	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species
Lfl_g28234	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_53043g0010	RUB1, ATRUB1, NEDD8	ubiquitin-fold protein (UBQ). ubiquitin-fold protein (RUB)	0.03	OrthoFinder output from all 47 species
MA_93495g0010	UBQ4	ubiquitin-fold protein (UBQ)	0.02	OrthoFinder output from all 47 species
Msp_g24684	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species
Solyc11g005650.1.1	Solyc11g005650	Ubiquitin-60S ribosomal protein L40 OS=Brassica rapa...	0.02	OrthoFinder output from all 47 species
Spa_g08748	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g53872	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	TAS	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010224	response to UV-B	IEP	Interproscan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004792	thiosulfate sulfurtransferase activity	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006569	tryptophan catabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007568	aging	IEP	HCCA
BP	GO:0007602	phototransduction	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
BP	GO:0009581	detection of external stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009583	detection of light stimulus	IEP	HCCA
BP	GO:0009585	red, far-red light phototransduction	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
MF	GO:0016004	phospholipase activator activity	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016783	sulfurtransferase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0035671	enone reductase activity	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0042436	indole-containing compound catabolic process	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0046909	obsolete intermembrane transport	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
MF	GO:0060229	lipase activator activity	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0071214	cellular response to abiotic stimulus	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071483	cellular response to blue light	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
BP	GO:0104004	cellular response to environmental stimulus	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	79	150
IPR000626	Ubiquitin-like_dom	231	302
IPR000626	Ubiquitin-like_dom	3	74
IPR000626	Ubiquitin-like_dom	155	226

External Links

No external refs found!

AT5G03240 (UBQ3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation