AT5G05120

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G05120
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
AT2G42410	ZFP11, ATZFP11	zinc finger protein 11	0.04	OrthoFinder output from all 47 species
AT3G23130	SUP, FLO10, FON1	C2H2 and C2HC zinc fingers superfamily protein	0.04	OrthoFinder output from all 47 species
Als_g00894	ZFP3	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aob_g12668	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0008.g011541	ZFP10, ATZFP10	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.29G038300.1	ZFP4, Ceric.29G038300	C2H2 subclass ZFP transcription factor & original...	0.01	OrthoFinder output from all 47 species
Dcu_g19018	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01009401001	ZFP7	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	OrthoFinder output from all 47 species
GSVIVT01011868001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
GSVIVT01013168001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
LOC_Os03g11680.1	ZFP8, LOC_Os03g11680	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os04g50070.1	ZFP10, ATZFP10,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
LOC_Os09g26210.1	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
LOC_Os12g42250.1	LOC_Os12g42250	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Lfl_g23357	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g19015	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Solyc03g113890.1.1	ZFP5, Solyc03g113890	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Solyc09g089590.1.1	SUP, FLO10,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e012453_P001	ZFP1, ATZFP1,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e017009_P001	Zm00001e017009	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e030783_P001	ZFP8, Zm00001e030783	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e036220_P001	ZFP8, Zm00001e036220	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0009008	DNA-methyltransferase activity	IEP	HCCA
BP	GO:0009691	cytokinin biosynthetic process	IEP	HCCA
MF	GO:0009824	AMP dimethylallyltransferase activity	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0052622	ATP dimethylallyltransferase activity	IEP	HCCA
MF	GO:0052623	ADP dimethylallyltransferase activity	IEP	HCCA
BP	GO:0060688	regulation of morphogenesis of a branching structure	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:1905428	regulation of plant organ formation	IEP	HCCA
BP	GO:2000032	regulation of secondary shoot formation	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G05120

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation