AT5G06650 (GIS2)

Aliases : GIS2

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G06650
Cluster	HCCA: Cluster_92

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00181650	KNU,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	OrthoFinder output from all 47 species
AMTR_s00057p00086480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
AMTR_s00079p00109960	JAG,...	Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
AMTR_s00088p00145510	ZFP5,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	OrthoFinder output from all 47 species
AT3G23130	SUP, FLO10, FON1	C2H2 and C2HC zinc fingers superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g009388	RAB, RBE	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene39584.t1	ZFP3, Aspi01Gene39584	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene53966.t1	RAB, RBE, Aspi01Gene53966	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.16G000500.1	RAB, RBE, Ceric.16G000500	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dac_g03711	ZFP4	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ehy_g13421	No alias	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01009401001	ZFP7	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	OrthoFinder output from all 47 species
GSVIVT01011868001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
GSVIVT01031007001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	OrthoFinder output from all 47 species
LOC_Os03g11680.1	ZFP8, LOC_Os03g11680	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os07g23450.1	LOC_Os07g23450	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Msp_g10324	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g00352	ZFP1, ATZFP1	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Solyc01g060420.2.1	ZFP6, Solyc01g060420	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Solyc03g117070.1.1	Solyc03g117070	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc09g061870.3.1	Solyc09g061870	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Spa_g21690	ZFP1, ATZFP1	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Zm00001e008019_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e025728_P002	JAG, Zm00001e025728	Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp....	0.05	OrthoFinder output from all 47 species
Zm00001e034219_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
Zm00001e034220_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
Zm00001e034221_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
Zm00001e037946_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e040612_P001	ZFP11, ATZFP11,...	C2H2 zinc finger transcription factor	0.09	OrthoFinder output from all 47 species
Zm00001e040940_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IMP	Interproscan
BP	GO:0009739	response to gibberellin	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010026	trichome differentiation	IMP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0045431	flavonol synthase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G06650 (GIS2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation