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AT5G09880


Description : Splicing factor, CC1-like


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G09880

Target Alias Description ECC score Gene Family Method Actions
Adi_g075755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre04.g213905 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g20118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022281001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 OrthoFinder output from all 47 species
GSVIVT01023998001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_11513 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10430689g0020 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp7g19710.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Ore_g15339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g005170.2.1 Solyc11g005170 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g10142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012773_P005 Zm00001e012773 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e038994_P002 Zm00001e038994 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 267 338
IPR000504 RRM_dom 175 237
IPR000504 RRM_dom 459 509
IPR029123 RBM39_linker 358 452
No external refs found!