1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G10980

AT5G10980


Description : Histone superfamily protein


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G10980

Target Alias Description ECC score Gene Family Method Actions
Adi_g025095 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26587 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07782 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01902 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36746 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g37572 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g47570 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04468 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g41988 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g25724 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48283 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Smo78992 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Spa_g56118 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g22408 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25875 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e022688_P001 Zm00001e022688 histone (H3) 0.03 OrthoFinder output from all 47 species
Zm00001e040856_P001 Zm00001e040856 histone (H3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000354 cis assembly of pre-catalytic spliceosome IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000578 embryonic axis specification IEP HCCA
MF GO:0004708 MAP kinase kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005686 U2 snRNP IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009554 megasporogenesis IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009798 axis specification IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
CC GO:0015030 Cajal body IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0043090 amino acid import IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043269 regulation of monoatomic ion transport IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!