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  5. AT5G11200

AT5G11200


Description : DEAD/DEAH box RNA helicase family protein


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G11200

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.05 OrthoFinder output from all 47 species
Aev_g13080 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09553.t1 Aspi01Gene09553 helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035967 No alias helicase UAP56 & original description: CDS=1-1335 0.03 OrthoFinder output from all 47 species
Cba_g77168 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.21 No alias DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os01g36890.2 LOC_Os01g36890 RNA helicase (Sub2). helicase component UAP56 of... 0.04 OrthoFinder output from all 47 species
LOC_Os01g36920.2 LOC_Os01g36920 RNA helicase (Sub2). helicase component UAP56 of... 0.07 OrthoFinder output from all 47 species
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.06 OrthoFinder output from all 47 species
Pir_g54474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g40258 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51328 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g066060.3.1 Solyc06g066060 RNA helicase (Sub2). helicase component UAP56 of... 0.06 OrthoFinder output from all 47 species
Tin_g14284 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IDA Interproscan
MF GO:0003697 single-stranded DNA binding IDA Interproscan
MF GO:0003725 double-stranded RNA binding IDA Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
MF GO:0016887 ATP hydrolysis activity IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 71 236
IPR001650 Helicase_C 276 383
No external refs found!