AT5G15840 (CO, FG)

Aliases : CO, FG

Description : B-box type zinc finger protein with CCT domain

Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G15840
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pir_g48875	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	NAS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007623	circadian rhythm	IGI	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009909	regulation of flower development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	None	Extended
BP	GO:0010018	far-red light signaling pathway	IMP	Interproscan
BP	GO:0010099	regulation of photomorphogenesis	None	Extended
BP	GO:0010100	negative regulation of photomorphogenesis	RCA	Interproscan
BP	GO:0010218	response to far red light	IMP	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048608	reproductive structure development	RCA	Interproscan
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071490	cellular response to far red light	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000030	regulation of response to red or far red light	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	60	105
IPR010402	CCT_domain	306	348

External Links

No external refs found!

AT5G15840 (CO, FG)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation