Description : PRLI-interacting factor, putative
Gene families : OG0001065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001065_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G19900 | |
| Cluster | HCCA: Cluster_24 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| MA_17430g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g11656 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g015020.4.1 | Solyc01g015020 | no hits & (original description: none) | 0.1 | OrthoFinder output from all 47 species | |
| Spa_g24640 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023514_P004 | Zm00001e023514 | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | HCCA |
| MF | GO:0001091 | RNA polymerase II general transcription initiation factor binding | IEP | HCCA |
| MF | GO:0001093 | TFIIB-class transcription factor binding | IEP | HCCA |
| MF | GO:0001098 | basal transcription machinery binding | IEP | HCCA |
| MF | GO:0001099 | basal RNA polymerase II transcription machinery binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| CC | GO:0005829 | cytosol | IEP | HCCA |
| CC | GO:0005956 | protein kinase CK2 complex | IEP | HCCA |
| BP | GO:0007010 | cytoskeleton organization | IEP | HCCA |
| BP | GO:0007017 | microtubule-based process | IEP | HCCA |
| MF | GO:0008134 | transcription factor binding | IEP | HCCA |
| BP | GO:0009846 | pollen germination | IEP | HCCA |
| BP | GO:0010440 | stomatal lineage progression | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0042393 | histone binding | IEP | HCCA |
| BP | GO:0042752 | regulation of circadian rhythm | IEP | HCCA |
| BP | GO:0042753 | positive regulation of circadian rhythm | IEP | HCCA |
| BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0070063 | RNA polymerase binding | IEP | HCCA |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | HCCA |
| CC | GO:1902554 | serine/threonine protein kinase complex | IEP | HCCA |
| CC | GO:1902911 | protein kinase complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
