AT5G20620 (UBQ4)

Aliases : UBQ4

Description : ubiquitin 4

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G20620

Target	Alias	Description	ECC score	Gene Family Method
Adi_g042217	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g06086	RUB1, ATRUB1, NEDD8	RUB ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.50	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.01	OrthoFinder output from all 47 species
LOC_Os03g13170.1	LOC_Os03g13170	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
MA_6985771g0010	No alias	Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare...	0.09	OrthoFinder output from all 47 species
Tin_g35067	UBQ14	UBQ ubiquiTin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e028916_P001	UBQ6, Zm00001e028916	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	231	302
IPR000626	Ubiquitin-like_dom	79	150
IPR000626	Ubiquitin-like_dom	307	378
IPR000626	Ubiquitin-like_dom	155	226
IPR000626	Ubiquitin-like_dom	3	74

External Links

No external refs found!