AT5G20885

Description : RING/U-box superfamily protein

Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G20885
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00070720	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
AMTR_s00088p00040490	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
AT4G24015	No alias	RING/U-box superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g024648	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g27185	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01529	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g02140	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Aop_g13275	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Aop_g48822	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Aop_g60107	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene00937.t1	BRH1, Aspi01Gene00937	E3 ubiquitin ligase *(BRH) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0059.g034708	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Cba_g43673	No alias	E3 ubiquitin ligase *(BRH) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.06G080900.1	Ceric.06G080900	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Ceric.15G012300.1	Ceric.15G012300	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Ceric.25G037000.1	Ceric.25G037000	not classified & original description: pacid=50594513...	0.02	OrthoFinder output from all 47 species
Ceric.39G045300.1	BRH1, Ceric.39G045300	not classified & original description: pacid=50582424...	0.03	OrthoFinder output from all 47 species
Dac_g03092	BRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g04583	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Dac_g14951	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Dcu_g03809	ATL2, TL2	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Dde_g14878	ATL8	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06688	MEE16	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Ehy_g28199	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
GSVIVT01019585001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01028038001	ATL2, TL2	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Gb_02533	ATL2, TL2	RING-H2-class E3 ligase	0.03	OrthoFinder output from all 47 species
Gb_08091	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Gb_20461	No alias	RING-H2-class E3 ligase	0.05	OrthoFinder output from all 47 species
Gb_32878	No alias	RING-H2-class E3 ligase	0.02	OrthoFinder output from all 47 species
Gb_41385	No alias	RING-H2-class E3 ligase	0.04	OrthoFinder output from all 47 species
LOC_Os01g11460.1	ATL43, LOC_Os01g11460	RING-H2-class E3 ligase	0.02	OrthoFinder output from all 47 species
LOC_Os06g12680.1	LOC_Os06g12680	RING-H2-class E3 ligase	0.03	OrthoFinder output from all 47 species
LOC_Os09g30160.1	XERICO, LOC_Os09g30160	ubiquitin protein ligase (XERICO)	0.03	OrthoFinder output from all 47 species
LOC_Os10g42390.1	LOC_Os10g42390	RING-H2-class E3 ligase	0.03	OrthoFinder output from all 47 species
Lfl_g39385	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_201391g0010	BRH1	Probable E3 ubiquitin-protein ligase RHA1A...	0.02	OrthoFinder output from all 47 species
MA_43543g0010	ATL2, TL2	RING-H2-class E3 ligase	0.02	OrthoFinder output from all 47 species
MA_9521306g0010	ATL2, TL2	RING-H2-class E3 ligase	0.03	OrthoFinder output from all 47 species
Mp3g00390.1	No alias	RING-H2-class E3 ligase	0.02	OrthoFinder output from all 47 species
Msp_g39033	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Pir_g29208	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19950	ATL6	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Ppi_g03072	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Ppi_g24030	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g57007	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Ppi_g61641	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003077	No alias	not classified & original description: CDS=1-870	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004696	ATRING1, RING1	not classified & original description: CDS=1-576	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012209	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Sam_g26212	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g067700.1.1	ATL3, Solyc02g067700	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Spa_g06983	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Spa_g24917	ATL2, TL2	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Tin_g04973	No alias	RING-H2-class ATL-subclass E3 ubiquiTin ligase &...	0.03	OrthoFinder output from all 47 species
Zm00001e015259_P001	Zm00001e015259	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e015445_P001	BRH1, Zm00001e015445	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e019779_P001	Zm00001e019779	RING-H2-class E3 ligase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0010289	homogalacturonan biosynthetic process	IEP	HCCA
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
BP	GO:0010394	homogalacturonan metabolic process	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0019374	galactolipid metabolic process	IEP	HCCA
BP	GO:0019375	galactolipid biosynthetic process	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0036293	response to decreased oxygen levels	IEP	HCCA
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
BP	GO:0045489	pectin biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	HCCA
BP	GO:0052325	cell wall pectin biosynthetic process	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0070482	response to oxygen levels	IEP	HCCA
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	HCCA
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	82	110

External Links

No external refs found!

AT5G20885

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation