AT5G22440

Description : Ribosomal protein L1p/L10e family

Gene families : OG0001297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G22440
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00167280	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
AMTR_s00053p00163590	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Adi_g012505	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g053018	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Adi_g106775	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g36055	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g18263	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ala_g29346	PGY1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g38886	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g06726	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g11631	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aob_g07010	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g02409	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Aspi01Gene41447.t1	PGY1, Aspi01Gene41447	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0022.g016098	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0035.g025561	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0404.g068356	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g27630	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g66373	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.18G006900.1	Ceric.18G006900	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.34G055700.1	Ceric.34G055700	component *(uL1) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020697.31	No alias	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
Cre02.g101350	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Dac_g03072	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dac_g25407	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g03488	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g27860	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g51102	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
GSVIVT01033841001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
GSVIVT01036128001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
Gb_13744	No alias	component RPL10a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Gb_28506	No alias	component RPL10a of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os01g64090.1	LOC_Os01g64090	component RPL10a of LSU proteome component	0.11	OrthoFinder output from all 47 species
LOC_Os02g21660.1	LOC_Os02g21660	component RPL10a of LSU proteome component	0.12	OrthoFinder output from all 47 species
LOC_Os08g44380.1	LOC_Os08g44380	component RPL10a of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os08g44450.2	LOC_Os08g44450	component RPL10a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Len_g07945	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g06380	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g26241	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
MA_12000g0010	No alias	component RPL10a of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_71921g0010	No alias	component RPL10a of LSU proteome component	0.23	OrthoFinder output from all 47 species
Mp3g07870.1	No alias	component RPL10a of LSU proteome component	0.17	OrthoFinder output from all 47 species
Msp_g00232	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Msp_g12625	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g03987	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c20_19190V3.1	Pp3c20_19190	Ribosomal protein L1p/L10e family	0.02	OrthoFinder output from all 47 species
Pp3c23_12730V3.1	Pp3c23_12730	Ribosomal protein L1p/L10e family	0.06	OrthoFinder output from all 47 species
Ppi_g26683	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020220	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g12736	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g26155	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Smo230302	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Solyc01g009520.4.1	Solyc01g009520	component RPL10a of LSU proteome component	0.12	OrthoFinder output from all 47 species
Solyc06g074300.4.1	Solyc06g074300	component RPL10a of LSU proteome component	0.2	OrthoFinder output from all 47 species
Solyc11g068420.2.1	Solyc11g068420	component RPL10a of LSU proteome component	0.2	OrthoFinder output from all 47 species
Spa_g08346	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g08347	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Spa_g08353	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Spa_g53937	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Tin_g10501	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e019205_P001	Zm00001e019205	component RPL10a of LSU proteome component	0.17	OrthoFinder output from all 47 species
Zm00001e022063_P001	Zm00001e022063	component RPL10a of LSU proteome component	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	HCCA
MF	GO:0004152	dihydroorotate dehydrogenase activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
MF	GO:0016289	CoA hydrolase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028364	Ribosomal_L1/biogenesis	22	212

External Links

No external refs found!

AT5G22440

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation