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  5. AT5G22720

AT5G22720


Description : F-box/RNI-like superfamily protein


Gene families : OG0007014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G22720

Target Alias Description ECC score Gene Family Method Actions
AT1G13780 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from all 47 species
AT1G16940 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 OrthoFinder output from all 47 species
AT1G32020 No alias F-box family protein 0.06 OrthoFinder output from all 47 species
AT1G60400 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G66640 No alias RNI-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G78750 No alias F-box/RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT1G78760 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G22600 No alias FBD / Leucine Rich Repeat domains containing protein 0.05 OrthoFinder output from all 47 species
AT5G22670 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 OrthoFinder output from all 47 species
AT5G22730 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT5G25850 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 OrthoFinder output from all 47 species
AT5G44940 No alias F-box/RNI-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT5G44950 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 OrthoFinder output from all 47 species
AT5G44970 No alias Protein with RNI-like/FBD-like domains 0.08 OrthoFinder output from all 47 species
AT5G44980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.07 OrthoFinder output from all 47 species
AT5G53635 No alias F-box/RNI-like/FBD-like domains-containing protein 0.1 OrthoFinder output from all 47 species
AT5G53840 No alias F-box/RNI-like/FBD-like domains-containing protein 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004108 citrate (Si)-synthase activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010222 stem vascular tissue pattern formation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010588 cotyledon vascular tissue pattern formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
MF GO:0036440 citrate synthase activity IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0048830 adventitious root development IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 24 60
IPR013101 Leu-rich_rpt_2 173 198
IPR006566 FBD 554 597
IPR006566 FBD 333 357
No external refs found!