AT5G26210 (AL4)

Aliases : AL4

Description : alfin-like 4

Gene families : OG0000258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G26210

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene55219.t1	AL2, Aspi01Gene55219	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Dde_g05730	AL1	methylation reader Alfin of PRC1 complex & original...	0.05	OrthoFinder output from all 47 species
Gb_04583	AL5	Alfin-like transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os01g66420.1	AL5, LOC_Os01g66420	Alfin-like transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os04g36730.1	AL5, LOC_Os04g36730	Alfin-like transcription factor	0.06	OrthoFinder output from all 47 species
Pir_g13361	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Pnu_g06791	AL5	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Sam_g06900	No alias	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Sam_g18885	No alias	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Solyc12g096040.3.1	AL4, Solyc12g096040	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species
Spa_g09873	AL4	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0035064	methylated histone binding	IDA	Interproscan
MF	GO:0042393	histone binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140030	modification-dependent protein binding	None	Extended
MF	GO:0140034	methylation-dependent protein binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044030	regulation of DNA methylation	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021998	Alfin_N	11	138
IPR019787	Znf_PHD-finger	202	250

External Links

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AT5G26210 (AL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation