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  5. AT5G28060

AT5G28060


Description : Ribosomal protein S24e family protein


Gene families : OG0000886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G28060

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00221450 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder output from all 47 species
Adi_g089829 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Adi_g102131 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Adi_g127987 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g06783 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Ala_g15047 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Ala_g18691 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g21106 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Als_g42458 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g64035 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Aob_g05584 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Aob_g10450 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aob_g38531 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g12028 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Aop_g12029 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Aop_g17637 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Aspi01Gene63749.t1 Aspi01Gene63749 component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g011184 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Azfi_s0103.g044621 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.19 OrthoFinder output from all 47 species
Cba_g74583 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cba_g78636 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.04G017300.1 Ceric.04G017300 component *(eS24) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Ceric.39G012600.1 Ceric.39G012600 component *(eS24) of small ribosomal-subunit (SSU)... 0.19 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000361.64 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 OrthoFinder output from all 47 species
Cre10.g456200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 OrthoFinder output from all 47 species
Dac_g18502 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Dcu_g17551 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Dcu_g25341 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.21 OrthoFinder output from all 47 species
Dcu_g27599 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g50254 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g20443 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01001167001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01021860001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.32 OrthoFinder output from all 47 species
Gb_38272 No alias component RPS24 of SSU proteome 0.23 OrthoFinder output from all 47 species
LOC_Os01g52490.1 LOC_Os01g52490 component RPS24 of SSU proteome 0.32 OrthoFinder output from all 47 species
LOC_Os02g13530.1 LOC_Os02g13530 component RPS24 of SSU proteome 0.35 OrthoFinder output from all 47 species
LOC_Os06g36160.1 LOC_Os06g36160 component RPS24 of SSU proteome 0.28 OrthoFinder output from all 47 species
Len_g49108 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Len_g55741 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g02767 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g17838 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g29188 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g31874 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
MA_119841g0010 No alias component RPS24 of SSU proteome 0.29 OrthoFinder output from all 47 species
Mp1g10680.1 No alias component RPS24 of SSU proteome 0.29 OrthoFinder output from all 47 species
Msp_g12627 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Msp_g38789 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g23191 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Nbi_g39203 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ore_g32358 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pir_g12348 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Pir_g24432 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pnu_g07150 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c12_10760V3.1 Pp3c12_10760 Ribosomal protein S24e family protein 0.12 OrthoFinder output from all 47 species
Pp3c12_10870V3.1 Pp3c12_10870 Ribosomal protein S24e family protein 0.03 OrthoFinder output from all 47 species
Pp3c13_22220V3.1 Pp3c13_22220 Ribosomal protein S24e family protein 0.14 OrthoFinder output from all 47 species
Pp3c3_19700V3.1 Pp3c3_19700 Ribosomal protein S24e family protein 0.11 OrthoFinder output from all 47 species
Pp3c4_16903V3.1 Pp3c4_16903 Ribosomal protein S24e family protein 0.02 OrthoFinder output from all 47 species
Ppi_g23912 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g26168 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g28244 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Ppi_g55932 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05665 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g09368 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g12713 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.19 OrthoFinder output from all 47 species
Sam_g12714 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Sam_g31840 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g45993 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Sam_g46518 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g47032 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g50017 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Smo227903 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Smo271584 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder output from all 47 species
Solyc01g097870.3.1 Solyc01g097870 component RPS24 of SSU proteome 0.28 OrthoFinder output from all 47 species
Solyc06g084230.3.1 Solyc06g084230 component RPS24 of SSU proteome 0.22 OrthoFinder output from all 47 species
Solyc09g065330.3.1 Solyc09g065330 component RPS24 of SSU proteome 0.12 OrthoFinder output from all 47 species
Spa_g10585 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.18 OrthoFinder output from all 47 species
Spa_g19361 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.22 OrthoFinder output from all 47 species
Tin_g29759 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.19 OrthoFinder output from all 47 species
Tin_g40771 No alias component *(eS24) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e014422_P002 Zm00001e014422 component RPS24 of SSU proteome 0.27 OrthoFinder output from all 47 species
Zm00001e019937_P001 Zm00001e019937 component RPS24 of SSU proteome 0.28 OrthoFinder output from all 47 species
Zm00001e028203_P001 Zm00001e028203 component RPS24 of SSU proteome 0.36 OrthoFinder output from all 47 species
Zm00001e030668_P001 Zm00001e030668 component RPS24 of SSU proteome 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005730 nucleolus IBA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0006414 translational elongation IBA Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001976 Ribosomal_S24e 25 103
No external refs found!