AT5G38660 (APE1)

Aliases : APE1

Description : acclimation of photosynthesis to environment

Gene families : OG0005042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005042_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G38660

Target	Alias	Description	ECC score	Gene Family Method
Adi_g042602	APE1	photosynthetic acclimation APE acclimation factor &...	0.02	OrthoFinder output from all 47 species
Aev_g05820	APE1	photosynthetic acclimation APE acclimation factor &...	0.09	OrthoFinder output from all 47 species
Ala_g01434	APE1	photosynthetic acclimation APE acclimation factor &...	0.08	OrthoFinder output from all 47 species
Als_g04161	APE1	photosynthetic acclimation APE acclimation factor &...	0.04	OrthoFinder output from all 47 species
Aob_g11675	APE1	photosynthetic acclimation APE acclimation factor &...	0.08	OrthoFinder output from all 47 species
Aop_g00474	APE1	photosynthetic acclimation APE acclimation factor &...	0.05	OrthoFinder output from all 47 species
Cba_g36758	APE1	photosynthetic acclimation APE acclimation factor &...	0.07	OrthoFinder output from all 47 species
Ceric.36G020000.1	APE1, Ceric.36G020000	photosynthetic acclimation APE acclimation factor &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.155	APE1	Photosynthesis.photophosphorylation.photosystem...	0.02	OrthoFinder output from all 47 species
Cre16.g665250	APE1	Photosynthesis.photophosphorylation.photosystem...	0.03	OrthoFinder output from all 47 species
Dcu_g15090	APE1	photosynthetic acclimation APE acclimation factor &...	0.04	OrthoFinder output from all 47 species
GSVIVT01036442001	APE1	Photosynthesis.photophosphorylation.photosystem...	0.13	OrthoFinder output from all 47 species
Gb_11215	APE1	photosynthetic acclimation APE acclimation factor	0.06	OrthoFinder output from all 47 species
LOC_Os08g27010.1	APE1, LOC_Os08g27010	photosynthetic acclimation APE acclimation factor	0.07	OrthoFinder output from all 47 species
Len_g00377	APE1	photosynthetic acclimation APE acclimation factor &...	0.07	OrthoFinder output from all 47 species
Lfl_g00668	APE1	photosynthetic acclimation APE acclimation factor &...	0.05	OrthoFinder output from all 47 species
Mp1g12820.1	APE1	photosynthetic acclimation APE acclimation factor	0.07	OrthoFinder output from all 47 species
Msp_g00353	APE1	photosynthetic acclimation APE acclimation factor &...	0.09	OrthoFinder output from all 47 species
Nbi_g30376	APE1	photosynthetic acclimation APE acclimation factor &...	0.08	OrthoFinder output from all 47 species
Ore_g17711	APE1	photosynthetic acclimation APE acclimation factor &...	0.06	OrthoFinder output from all 47 species
Pir_g12433	APE1	photosynthetic acclimation APE acclimation factor &...	0.04	OrthoFinder output from all 47 species
Pir_g59760	APE1	photosynthetic acclimation APE acclimation factor &...	0.05	OrthoFinder output from all 47 species
Pp3c4_3720V3.1	APE1, Pp3c4_3720	acclimation of photosynthesis to environment	0.03	OrthoFinder output from all 47 species
Ppi_g32168	APE1	photosynthetic acclimation APE acclimation factor &...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016876	APE1	photosynthetic acclimation APE acclimation factor &...	0.05	OrthoFinder output from all 47 species
Sam_g16456	No alias	photosynthetic acclimation APE acclimation factor &...	0.03	OrthoFinder output from all 47 species
Smo117112	APE1	Photosynthesis.photophosphorylation.photosystem...	0.02	OrthoFinder output from all 47 species
Solyc03g034170.4.1	APE1, Solyc03g034170	photosynthetic acclimation APE acclimation factor	0.09	OrthoFinder output from all 47 species
Spa_g11785	APE1	photosynthetic acclimation APE acclimation factor &...	0.06	OrthoFinder output from all 47 species
Zm00001e004293_P003	APE1, Zm00001e004293	photosynthetic acclimation APE acclimation factor	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	RCA	Interproscan
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	None	Extended
BP	GO:0005984	disaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009311	oligosaccharide metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
CC	GO:0019867	outer membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030154	cell differentiation	RCA	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006636	unsaturated fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006655	phosphatidylglycerol biosynthetic process	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
MF	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
CC	GO:0009508	plastid chromosome	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
MF	GO:0009977	proton motive force dependent protein transmembrane transporter activity	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
BP	GO:0010114	response to red light	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010218	response to far red light	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0016050	vesicle organization	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016108	tetraterpenoid metabolic process	IEP	HCCA
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016116	carotenoid metabolic process	IEP	HCCA
BP	GO:0016117	carotenoid biosynthetic process	IEP	HCCA
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0031361	obsolete integral component of thylakoid membrane	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
CC	GO:0033281	TAT protein transport complex	IEP	HCCA
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
CC	GO:0043235	receptor complex	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021275	DUF2854	110	260

External Links

No external refs found!

AT5G38660 (APE1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation