AT5G39700 (MYB89, AtMYB89)

Aliases : MYB89, AtMYB89

Description : myb domain protein 89

Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G39700
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AT1G17950	BW52, ATMYB52, MYB52	myb domain protein 52	0.05	OrthoFinder output from all 47 species
AT1G43330	No alias	Homeodomain-like superfamily protein	0.01	OrthoFinder output from all 47 species
AT1G73410	MYB54, ATMYB54	myb domain protein 54	0.04	OrthoFinder output from all 47 species
AT2G25230	MYB100, AtMYB100	myb domain protein 100	0.07	OrthoFinder output from all 47 species
AT3G27785	PGA37, ATMYB118, MYB118	myb domain protein 118	0.05	OrthoFinder output from all 47 species
AT4G00540	ATMYB3R2,...	myb domain protein 3r2	0.03	OrthoFinder output from all 47 species
AT5G40430	MYB22, AtMYB22	myb domain protein 22	0.07	OrthoFinder output from all 47 species
Adi_g059961	MYB70, AtMYB70	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.02	OrthoFinder output from all 47 species
Adi_g109382	MYB77	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.02	OrthoFinder output from all 47 species
Aev_g03283	MYB77	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.02	OrthoFinder output from all 47 species
Als_g18058	MYB3R-3, AtMYB3R3	R1R2R3-MYB transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12966	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene14847.t1	MYB70, AtMYB70,...	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.03	OrthoFinder output from all 47 species
Azfi_s0105.g044929	AtMYB117, LOF1, MYB117	MYB class-R2R3 subgroup-21 transcription factor &...	0.03	OrthoFinder output from all 47 species
Cba_g19865	MYB77	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.02	OrthoFinder output from all 47 species
Ceric.23G045000.1	MYBR1, MYB44,...	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.03	OrthoFinder output from all 47 species
Cre16.g677382	MYBR1, MYB44,...	RNA biosynthesis.transcriptional activation.MYB...	0.01	OrthoFinder output from all 47 species
Dac_g32984	LOF2, MYB105, ATMYB105	MYB class-R2R3 subgroup-21 transcription factor &...	0.02	OrthoFinder output from all 47 species
Ehy_g06557	MYB54, ATMYB54	MYB class-R2R3 subgroup-21 transcription factor &...	0.02	OrthoFinder output from all 47 species
Ehy_g17909	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g24773	MYB77	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.03	OrthoFinder output from all 47 species
GSVIVT01008484001	MYB54, ATMYB54	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
GSVIVT01027493001	MYB3R-1,...	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
LOC_Os06g43090.1	MYBR1, MYB44,...	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
LOC_Os11g10130.1	BW52, ATMYB52,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Lfl_g25897	MYB77	not classified & original description: none	0.01	OrthoFinder output from all 47 species
MA_10426233g0010	MYB3R-1,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
MA_948059g0010	ATMYB3R5, MYB3R-5	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
Msp_g06500	LOF2, MYB105, ATMYB105	MYB class-R2R3 subgroup-21 transcription factor &...	0.02	OrthoFinder output from all 47 species
Msp_g44400	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g50854	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g27096	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g14529	LOF2, MYB105, ATMYB105	MYB class-R2R3 subgroup-21 transcription factor &...	0.03	OrthoFinder output from all 47 species
Ppi_g18972	MYB1, AtMYB1	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.02	OrthoFinder output from all 47 species
Solyc08g068320.3.1	MYB3R-1,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Solyc09g011780.3.1	MYB1, AtMYB1,...	transcription factor (MYB)	0.01	OrthoFinder output from all 47 species
Zm00001e005044_P002	ATMYB119,...	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
BP	GO:0030656	regulation of vitamin metabolic process	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
BP	GO:0043255	regulation of carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0046137	negative regulation of vitamin metabolic process	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA
BP	GO:2000082	regulation of L-ascorbic acid biosynthetic process	IEP	HCCA
BP	GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	57	101
IPR001005	SANT/Myb	108	152

External Links

No external refs found!

AT5G39700 (MYB89, AtMYB89)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation