AT5G42540 (XRN2, AtXRN2)

Aliases : XRN2, AtXRN2

Description : exoribonuclease 2

Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G42540

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00491p00000370	XRN3, AtXRN3,...	5-3 exoribonuclease 3 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Aev_g17886	XRN3, AtXRN3	exoribonuclease *(RAT1/XRN2) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g15103	XRN3, AtXRN3	exoribonuclease *(RAT1/XRN2) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g21055	XRN3, AtXRN3	exoribonuclease *(XRN4) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11344	XRN3, AtXRN3	exoribonuclease *(RAT1/XRN2) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g08290	EIN5, AIN1, XRN4, ATXRN4	exoribonuclease *(XRN4) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g68931	XRN3, AtXRN3	exoribonuclease *(RAT1/XRN2) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0241.g059771	XRN3, AtXRN3	exoribonuclease *(RAT1/XRN2) & original description: CDS=1-2460	0.03	OrthoFinder output from all 47 species
Cba_g15355	XRN3, AtXRN3	exoribonuclease *(RAT1/XRN2) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g24148	EIN5, AIN1, XRN4, ATXRN4	exoribonuclease *(XRN4) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.07G061100.1	EIN5, AIN1,...	exoribonuclease *(XRN4) & original description:...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.175	XRN3, AtXRN3	5-3 exoribonuclease 3 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre16.g679900	XRN3, AtXRN3	5-3 exoribonuclease 3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Dac_g23449	EIN5, AIN1, XRN4, ATXRN4	exoribonuclease *(XRN4) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g42552	EIN5, AIN1, XRN4, ATXRN4	exoribonuclease *(XRN4) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g05069	XRN3, AtXRN3	exoribonuclease *(RAT1/XRN2) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009879001	XRN3, AtXRN3	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
GSVIVT01021865001	EIN5, AIN1, XRN4, ATXRN4	RNA processing.RNA decay.deadenylation-dependent...	0.04	OrthoFinder output from all 47 species
GSVIVT01024465001	XRN3, AtXRN3	5-3 exoribonuclease 3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Lfl_g06753	XRN3, AtXRN3	exoribonuclease *(RAT1/XRN2) & original description: none	0.04	OrthoFinder output from all 47 species
MA_17503g0010	XRN3, AtXRN3	5-3 exoribonuclease 3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Pnu_g16080	XRN3, AtXRN3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g03252	EIN5, AIN1, XRN4, ATXRN4	exoribonuclease *(XRN4) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g28196	No alias	exoribonuclease *(XRN4) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc12g089280.2.1	XRN3, AtXRN3,...	exoribonuclease (RAT1/XRN2)	0.06	OrthoFinder output from all 47 species
Zm00001e011879_P001	EIN5, AIN1,...	EBF-modulating exoribonuclease (EIN5/XRN4)....	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004532	exoribonuclease activity	None	Extended
MF	GO:0004534	5'-3' exoribonuclease activity	IGI	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	TAS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008409	5'-3' exonuclease activity	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010048	vernalization response	RCA	Interproscan
BP	GO:0010586	miRNA metabolic process	None	Extended
BP	GO:0010587	miRNA catabolic process	IMP	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0034661	ncRNA catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
BP	GO:0000741	karyogamy	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006409	tRNA export from nucleus	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009687	abscisic acid metabolic process	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0043288	apocarotenoid metabolic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048825	cotyledon development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051031	tRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1902644	tertiary alcohol metabolic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	264	279
IPR004859	Xrn1_N	1	255

External Links

No external refs found!

AT5G42540 (XRN2, AtXRN2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation