AT5G43560

Description : TRAF-like superfamily protein

Gene families : OG0003009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003009_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G43560

Target	Alias	Description	ECC score	Gene Family Method
Ala_g24417	No alias	endomembrane trafficking ATG6-stability regulator...	0.04	OrthoFinder output from all 47 species
Aspi01Gene55555.t1	Aspi01Gene55555	endomembrane trafficking ATG6-stability regulator...	0.02	OrthoFinder output from all 47 species
Dcu_g03193	No alias	endomembrane trafficking ATG6-stability regulator...	0.03	OrthoFinder output from all 47 species
LOC_Os01g56800.1	LOC_Os01g56800	TRAF1 endomembrane trafficking ATG6-stability regulator protein	0.06	OrthoFinder output from all 47 species
LOC_Os05g43280.1	LOC_Os05g43280	TRAF1 endomembrane trafficking ATG6-stability regulator protein	0.05	OrthoFinder output from all 47 species
Mp8g14880.1	No alias	TRAF1 endomembrane trafficking ATG6-stability regulator protein	0.02	OrthoFinder output from all 47 species
Ppi_g15640	No alias	endomembrane trafficking ATG6-stability regulator...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018228	No alias	endomembrane trafficking ATG6-stability regulator...	0.02	OrthoFinder output from all 47 species
Sam_g08395	No alias	endomembrane trafficking ATG6-stability regulator...	0.03	OrthoFinder output from all 47 species
Zm00001e027387_P004	Zm00001e027387	TRAF1 endomembrane trafficking ATG6-stability regulator protein	0.03	OrthoFinder output from all 47 species
Zm00001e032087_P004	Zm00001e032087	TRAF1 endomembrane trafficking ATG6-stability regulator protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	RCA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	None	Extended
MF	GO:0019901	protein kinase binding	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043424	protein histidine kinase binding	IPI	Interproscan
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005652	nuclear lamina	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0034399	nuclear periphery	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002083	MATH/TRAF_dom	75	190

External Links

No external refs found!

AT5G43560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation