AT5G44160 (NUC)

Aliases : NUC

Description : C2H2-like zinc finger protein

Gene families : OG0000265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000265_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G44160

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00120910	IDD4, AtIDD4,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	OrthoFinder output from all 47 species
AT2G02070	IDD5, AtIDD5	indeterminate(ID)-domain 5	0.03	OrthoFinder output from all 47 species
Adi_g012802	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Adi_g024701	No alias	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g028548	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g048017	AtIDD12, IDD12	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g060453	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g068284	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g068647	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g069013	MGP	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g080135	MGP	C2H2 subclass IDD transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aev_g06786	MGP	C2H2 subclass IDD transcription factor & original...	0.04	OrthoFinder output from all 47 species
Als_g22280	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g22616	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g37976	MGP	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aop_g21518	IDD14, AtIDD14	C2H2 subclass IDD transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene21463.t1	IDD2, AtIDD2,...	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene34058.t1	IDD16, AtIDD16,...	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene69376.t1	IDD2, AtIDD2,...	C2H2 subclass IDD transcription factor & original...	0.07	OrthoFinder output from all 47 species
Cba_g17110	No alias	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g20838	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cba_g42994	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g72735	MGP	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G010300.1	IDD16, AtIDD16,...	C2H2 subclass IDD transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.14G021500.1	IDD2, AtIDD2,...	C2H2 subclass IDD transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ceric.15G065400.1	IDD2, AtIDD2,...	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.24G030700.1	IDD2, AtIDD2,...	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.33G056300.1	IDD2, AtIDD2,...	C2H2 subclass IDD transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dac_g28879	MGP	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g04941	MGP	C2H2 subclass IDD transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dcu_g16536	MGP	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g32612	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.05	OrthoFinder output from all 47 species
Dcu_g36408	NUC	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g24855	No alias	component *(MED19) of head module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Ehy_g29791	AtIDD12, IDD12	C2H2 subclass IDD transcription factor & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01003119001	AtIDD12, IDD12	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	OrthoFinder output from all 47 species
GSVIVT01010961001	MGP	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	OrthoFinder output from all 47 species
GSVIVT01025658001	JKD	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	OrthoFinder output from all 47 species
GSVIVT01031112001	IDD2, AtIDD2	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	OrthoFinder output from all 47 species
GSVIVT01035391001	AtIDD7, IDD7	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
LOC_Os01g09850.1	AtIDD7, IDD7,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os01g14010.1	MGP, LOC_Os01g14010	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os04g47860.2	AtIDD12, IDD12,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os08g36390.1	IDD14, AtIDD14,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os09g27650.2	IDD14, AtIDD14,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Len_g31581	AtIDD12, IDD12	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
MA_10426334g0030	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_10430013g0020	MGP	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
MA_10430137g0020	MGP	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
MA_26324g0010	MGP	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Ore_g06563	MGP	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g17643	MGP	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g33896	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g27424	JKD	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g31312	MGP	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pnu_g20764	MGP	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pnu_g28092	IDD14, AtIDD14	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ppi_g09226	MGP	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014362	IDD14, AtIDD14	C2H2 subclass IDD transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc03g098070.3.1	IDD14, AtIDD14,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc06g062670.3.1	AtIDD7, IDD7,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc06g072360.3.1	IDD14, AtIDD14,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Solyc07g053570.4.1	MGP, Solyc07g053570	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
Solyc09g074780.3.1	NUC, Solyc09g074780	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Spa_g15232	IDD2, AtIDD2	C2H2 subclass IDD transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e004751_P001	AtIDD7, IDD7,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e010628_P002	MGP, Zm00001e010628	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e014666_P001	AtIDD7, IDD7,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e016559_P001	AtIDD7, IDD7,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e025973_P001	AtIDD7, IDD7,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e026143_P001	MGP, Zm00001e026143	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e027791_P001	AtIDD7, IDD7,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e034317_P001	IDD14, AtIDD14,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e035365_P003	MGP, Zm00001e035365	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e038625_P001	IDD16, AtIDD16,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0006826	iron ion transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009267	cellular response to starvation	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010106	cellular response to iron ion starvation	RCA	Interproscan
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0010260	obsolete animal organ senescence	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transmembrane transport	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0040034	regulation of development, heterochronic	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042594	response to starvation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048506	regulation of timing of meristematic phase transition	None	Extended
BP	GO:0048509	regulation of meristem development	None	Extended
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IMP	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048573	photoperiodism, flowering	IMP	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098661	inorganic anion transmembrane transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902025	nitrate import	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000217	DNA secondary structure binding	IEP	HCCA
MF	GO:0003680	minor groove of adenine-thymine-rich DNA binding	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
BP	GO:0007568	aging	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G44160 (NUC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation