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  5. AT5G44230

AT5G44230


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G44230
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT1G56690 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g003786 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g007107 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g043109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074694 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g083315 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087678 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g118106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18096 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04672 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20781 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07837 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55221 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04742 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g21660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02020 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g09002 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000621 No alias ssDNA-binding protein *(OSB) & original description: CDS=97-654 0.01 OrthoFinder output from all 47 species
Azfi_s0007.g010584 No alias not classified & original description: CDS=134-2257 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012554 No alias not classified & original description: CDS=1-2283 0.01 OrthoFinder output from all 47 species
Azfi_s0020.g015553 OTP84 not classified & original description: CDS=36-2027 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029802 No alias not classified & original description: CDS=1-2208 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030697 No alias not classified & original description: CDS=1-2361 0.01 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.01 OrthoFinder output from all 47 species
Azfi_s0626.g079975 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2118 0.02 OrthoFinder output from all 47 species
Cba_g00281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07505 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19545 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19562 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20531 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35130 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36067 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g38005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G004000.1 CRR2, Ceric.19G004000 not classified & original description: pacid=50575630... 0.02 OrthoFinder output from all 47 species
Ceric.29G070800.1 Ceric.29G070800 not classified & original description: pacid=50625555... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.200 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g18570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g45650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g33764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36401 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g21519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24073 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g40992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.01 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.01 OrthoFinder output from all 47 species
Gb_29557 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Len_g18879 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18931 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44793 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g54495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10427854g0020 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.01 OrthoFinder output from all 47 species
Msp_g05679 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14067 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g16918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g24622 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43705 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43369 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g01995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61524 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g14861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30304 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33120 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023182 No alias not classified & original description: CDS=1-4812 0.03 OrthoFinder output from all 47 species
Sam_g03859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19760 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g064750.2.1 Solyc04g064750 RNA editing factor (MEF12). serine carboxypeptidase 0.02 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53271 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g04677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17154 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20839 LOI1, MEF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23116 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30434 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004124 cysteine synthase activity IEP HCCA
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004844 uracil DNA N-glycosylase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP HCCA
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010026 trichome differentiation IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
BP GO:0048445 carpel morphogenesis IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097506 deaminated base DNA N-glycosylase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 188 214
IPR002885 Pentatricopeptide_repeat 216 242
IPR002885 Pentatricopeptide_repeat 423 447
IPR032867 DYW_dom 525 647
IPR002885 Pentatricopeptide_repeat 244 292
IPR002885 Pentatricopeptide_repeat 115 159
IPR002885 Pentatricopeptide_repeat 347 392
No external refs found!