AT5G46880 (HDG5, HB-7)

Aliases : HDG5, HB-7

Description : homeobox-7

Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G46880
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00089530	HDG5, HB-7,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
AT4G17710	HDG4	homeodomain GLABROUS 4	0.03	OrthoFinder output from all 47 species
Adi_g020330	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06757	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14038	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0131.g049156	PDF2	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g06562	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.18G081600.1	ATML1, Ceric.18G081600	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g25466	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os04g53540.3	PDF2, LOC_Os04g53540	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
LOC_Os08g19590.1	ATML1, LOC_Os08g19590	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
Solyc03g120620.3.1	GL2, Solyc03g120620	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Spa_g05065	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045596	negative regulation of cell differentiation	None	Extended
BP	GO:0048497	maintenance of floral organ identity	IGI	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090700	maintenance of plant organ identity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002913	START_lipid-bd_dom	324	555
IPR001356	Homeobox_dom	112	167

External Links

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AT5G46880 (HDG5, HB-7)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation