AT5G46910

Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Gene families : OG0002434 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002434_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G46910

Target	Alias	Description	ECC score	Gene Family Method
Aev_g18987	No alias	histone demethylase *(PKDM8) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene69650.t1	Aspi01Gene69650	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0016.g014270	No alias	histone demethylase *(PKDM8) & original description: CDS=141-2051	0.03	OrthoFinder output from all 47 species
GSVIVT01013083001	No alias	RNA biosynthesis.transcriptional activation.JUMONJI...	0.08	OrthoFinder output from all 47 species
LOC_Os02g46930.1	LOC_Os02g46930	transcription factor (JUMONJI)	0.05	OrthoFinder output from all 47 species
Len_g58593	No alias	histone demethylase *(PKDM8) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03865	No alias	histone demethylase *(PKDM8) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc08g076390.3.1	Solyc08g076390	histone demethylase (PKDM8). transcription factor (JUMONJI)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	HCCA
BP	GO:0010253	UDP-rhamnose biosynthetic process	IEP	HCCA
MF	GO:0010280	UDP-L-rhamnose synthase activity	IEP	HCCA
BP	GO:0033478	UDP-rhamnose metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003347	JmjC_dom	280	403
IPR004198	Znf_C5HC2	500	551
IPR003349	JmjN	104	136

External Links

No external refs found!

AT5G46910

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation