AT5G47930

Description : Zinc-binding ribosomal protein family protein

Gene families : OG0001813 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001813_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G47930
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00194290	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Aev_g42935	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Als_g39722	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g46225	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene01804.t1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene36661.t1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0004.g008655	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Azfi_s0182.g056413	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cba_g12663	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g12664	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.05G019300.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Ceric.11G008500.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.26G067400.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Ceric.34G024800.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001299.2	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Cre02.g145250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
Cre12.g529400	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
Dac_g17983	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Dac_g40966	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g35625	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Dcu_g35656	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Dde_g00057	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01001113001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	OrthoFinder output from all 47 species
GSVIVT01032964001	ARS27A, RS27A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
LOC_Os04g27860.1	LOC_Os04g27860	component RPS27 of SSU proteome	0.05	OrthoFinder output from all 47 species
Lfl_g15035	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g40961	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_54625g0010	ARS27A, RS27A	component RPS27 of SSU proteome	0.09	OrthoFinder output from all 47 species
MA_87055g0010	ARS27A, RS27A	component RPS27 of SSU proteome	0.04	OrthoFinder output from all 47 species
Mp5g09510.1	No alias	component RPS27 of SSU proteome	0.14	OrthoFinder output from all 47 species
Msp_g15674	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g63736	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c1_15840V3.1	Pp3c1_15840	ribosomal protein S27	0.16	OrthoFinder output from all 47 species
Pp3c21_21540V3.1	Pp3c21_21540	ribosomal protein S27	0.02	OrthoFinder output from all 47 species
Pp3c22_18310V3.1	ARS27A, RS27A,...	ribosomal protein S27	0.09	OrthoFinder output from all 47 species
Pp3c2_20540V3.1	ARS27A, RS27A,...	ribosomal protein S27	0.13	OrthoFinder output from all 47 species
Sam_g37791	No alias	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Smo163947	ARS27A, RS27A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	OrthoFinder output from all 47 species
Solyc01g008080.3.1	ARS27A, RS27A,...	component RPS27 of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g16488	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Spa_g53353	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g57360	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g24199	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e024704_P001	ARS27A, RS27A,...	component RPS27 of SSU proteome	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000036	acyl carrier activity	IEP	HCCA
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0042335	cuticle development	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
MF	GO:0051192	prosthetic group binding	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000592	Ribosomal_S27	30	84

External Links

No external refs found!

AT5G47930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation