1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G48620

AT5G48620


Description : Disease resistance protein (CC-NBS-LRR class) family


Gene families : OG0000422 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000422_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G48620
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00263910 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00145930 evm_27.TU.AmTr_v1... Probable disease resistance RPP8-like protein 2... 0.04 OrthoFinder output from all 47 species
AMTR_s00088p00057720 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00090p00137350 RPP13,... Disease resistance protein RPP13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00190p00027950 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00190p00029950 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G50180 No alias NB-ARC domain-containing disease resistance protein 0.06 OrthoFinder output from all 47 species
AT1G58390 No alias Disease resistance protein (CC-NBS-LRR class) family 0.05 OrthoFinder output from all 47 species
AT1G58400 No alias Disease resistance protein (CC-NBS-LRR class) family 0.04 OrthoFinder output from all 47 species
AT1G59780 No alias NB-ARC domain-containing disease resistance protein 0.04 OrthoFinder output from all 47 species
AT3G07040 RPM1, RPS3 NB-ARC domain-containing disease resistance protein 0.04 OrthoFinder output from all 47 species
AT3G46710 No alias NB-ARC domain-containing disease resistance protein 0.04 OrthoFinder output from all 47 species
AT3G46730 No alias NB-ARC domain-containing disease resistance protein 0.06 OrthoFinder output from all 47 species
AT5G35450 No alias Disease resistance protein (CC-NBS-LRR class) family 0.07 OrthoFinder output from all 47 species
Aob_g22709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007238001 HRT, RCY1, RPP8 Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01012167001 RPM1, RPS3 Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01018564001 No alias Putative disease resistance RPP13-like protein 3... 0.03 OrthoFinder output from all 47 species
GSVIVT01032824001 No alias Putative disease resistance protein At1g50180... 0.03 OrthoFinder output from all 47 species
Gb_25815 No alias Putative disease resistance protein RGA3 OS=Solanum... 0.06 OrthoFinder output from all 47 species
Gb_26463 No alias Putative disease resistance protein RGA4 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Gb_32662 No alias Putative disease resistance protein RGA3 OS=Solanum... 0.03 OrthoFinder output from all 47 species
Gb_35026 ZAR1 Disease resistance protein RPP8 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_40740 RPM1, RPS3 Putative disease resistance protein RGA3 OS=Solanum... 0.03 OrthoFinder output from all 47 species
LOC_Os01g23380.1 RPP13, LOC_Os01g23380 no description available(sp|p0do08|pikm2_orysj : 348.0) 0.03 OrthoFinder output from all 47 species
LOC_Os03g46550.1 RPP13, LOC_Os03g46550 no description available(sp|q2r8l1|rga5s_orysj : 340.0) 0.06 OrthoFinder output from all 47 species
LOC_Os06g22460.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os10g03570.1 LOC_Os10g03570 no description available(sp|q2r8l1|rga5s_orysj : 283.0) 0.03 OrthoFinder output from all 47 species
LOC_Os11g12300.1 LOC_Os11g12300 Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os11g12340.2 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os12g17480.1 LOC_Os12g17480 no description available(sp|q2r8l1|rga5s_orysj : 343.0) 0.02 OrthoFinder output from all 47 species
Solyc03g005650.1.1 Solyc03g005650 Probable disease resistance protein At1g58390... 0.03 OrthoFinder output from all 47 species
Solyc04g009290.1.1 RPP13, Solyc04g009290 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g009690.2.1 RPP13, Solyc04g009690 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc10g008220.4.1 Solyc10g008220 Putative late blight resistance protein homolog R1A-6... 0.04 OrthoFinder output from all 47 species
Zm00001e024479_P001 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e039751_P001 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006952 defense response ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002376 immune system process IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0008219 cell death IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009626 plant-type hypersensitive response IEP HCCA
BP GO:0012501 programmed cell death IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
MF GO:0016688 L-ascorbate peroxidase activity IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0034050 programmed cell death induced by symbiont IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044403 biological process involved in symbiotic interaction IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0051702 biological process involved in interaction with symbiont IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
BP GO:2000071 regulation of defense response by callose deposition IEP HCCA
InterPro domains Description Start Stop
IPR002182 NB-ARC 169 418
No external refs found!