AT5G48800

Description : Phototropic-responsive NPH3 family protein

Gene families : OG0000584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000584_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G48800
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00005p00262560	evm_27.TU.AmTr_v1...	BTB/POZ domain-containing protein At5g48800...	0.05	OrthoFinder output from all 47 species
AMTR_s00057p00189750	evm_27.TU.AmTr_v1...	BTB/POZ domain-containing protein At1g03010...	0.08	OrthoFinder output from all 47 species
Cba_g03271	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.25G051000.1	Ceric.25G051000	not classified & original description: pacid=50594195...	0.04	OrthoFinder output from all 47 species
Dac_g14779	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01010983001	No alias	BTB/POZ domain-containing protein At1g03010...	0.08	OrthoFinder output from all 47 species
GSVIVT01028637001	No alias	BTB/POZ domain-containing protein At5g48800...	0.05	OrthoFinder output from all 47 species
Gb_15614	No alias	BTB/POZ domain-containing protein At1g03010...	0.06	OrthoFinder output from all 47 species
Lfl_g18416	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp5g07060.1	No alias	BTB/POZ domain-containing protein At5g48800...	0.02	OrthoFinder output from all 47 species
Msp_g37236	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0175.g024554	No alias	not classified & original description: CDS=1-1890	0.03	OrthoFinder output from all 47 species
Smo231529	No alias	BTB/POZ domain-containing protein At5g48800...	0.03	OrthoFinder output from all 47 species
Solyc09g048980.4.1	Solyc09g048980	BTB/POZ domain-containing protein At3g08570...	0.03	OrthoFinder output from all 47 species
Solyc09g061250.4.1	Solyc09g061250	BTB/POZ domain-containing protein At5g48800...	0.07	OrthoFinder output from all 47 species
Zm00001e039269_P001	Zm00001e039269	BTB/POZ domain-containing protein At3g08570...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0004871	obsolete signal transducer activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	ISS	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009944	polarity specification of adaxial/abaxial axis	RCA	Interproscan
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010075	regulation of meristem growth	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0001763	morphogenesis of a branching structure	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0006995	cellular response to nitrogen starvation	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0009051	pentose-phosphate shunt, oxidative branch	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009953	dorsal/ventral pattern formation	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010065	primary meristem tissue development	IEP	HCCA
BP	GO:0010067	procambium histogenesis	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010223	secondary shoot formation	IEP	HCCA
BP	GO:0010346	shoot axis formation	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0032350	regulation of hormone metabolic process	IEP	HCCA
BP	GO:0032352	positive regulation of hormone metabolic process	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033238	regulation of amine metabolic process	IEP	HCCA
BP	GO:0033240	positive regulation of amine metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043562	cellular response to nitrogen levels	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0045764	positive regulation of amino acid metabolic process	IEP	HCCA
BP	GO:0045927	positive regulation of growth	IEP	HCCA
BP	GO:0048263	determination of dorsal identity	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048508	embryonic meristem development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0062013	positive regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0080060	integument development	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0090354	regulation of auxin metabolic process	IEP	HCCA
BP	GO:0090355	positive regulation of auxin metabolic process	IEP	HCCA
BP	GO:0090357	regulation of tryptophan metabolic process	IEP	HCCA
BP	GO:0090358	positive regulation of tryptophan metabolic process	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:2000603	regulation of secondary growth	IEP	HCCA
BP	GO:2000605	positive regulation of secondary growth	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000210	BTB/POZ_dom	43	127
IPR027356	NPH3_dom	219	459

External Links

No external refs found!

AT5G48800

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation