AT5G50570 (SPL13, SPL13A)

Aliases : SPL13, SPL13A

Description : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Gene families : OG0000121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G50570
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
Adi_g080762	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g104042	SPL11	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g104940	SPL8	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g112854	SPL10	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g38965	SPL2	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g38966	SPL2	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g04360	SPL3	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08572	SPL8	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g46708	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene14484.t1	SPL3, Aspi01Gene14484	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27771.t1	SPL2, Aspi01Gene27771	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27773.t1	SPL3, Aspi01Gene27773	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene67362.t1	Aspi01Gene67362	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene72167.t1	SPL3, Aspi01Gene72167	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0002.g001662	SPL7, ATSPL7	SBP-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Azfi_s0173.g055767	SPL3	SBP-type transcription factor & original description: CDS=94-1491	0.02	OrthoFinder output from all 47 species
Ceric.29G007700.1	SPL2, Ceric.29G007700	SBP-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cre02.g104700	SPL2	RNA biosynthesis.transcriptional activation.SBP...	0.02	OrthoFinder output from all 47 species
Cre02.g110150	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.02	OrthoFinder output from all 47 species
Cre17.g698233	SPL1	RNA biosynthesis.transcriptional activation.SBP...	0.02	OrthoFinder output from all 47 species
Dcu_g14928	SPL2	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g18256	SPL3	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g22348	AtSPL9, SPL9	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g23320	SPL2	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03904	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g15224	SPL8	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01003836001	SPL12	RNA biosynthesis.transcriptional activation.SBP...	0.05	OrthoFinder output from all 47 species
Gb_03921	SPL8	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
LOC_Os05g33810.1	SPL7, ATSPL7,...	transcription factor (SBP). copper homeostasis regulator (SPL7)	0.04	OrthoFinder output from all 47 species
LOC_Os11g30370.1	SPL13, SPL13A,...	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species
Lfl_g04146	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05547	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g17821	SPL3	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10427464g0040	SPL1R2, ATSPL14,...	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
MA_3179g0020	SPL8	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
MA_47367g0010	SPL8	transcription factor (SBP)	0.05	OrthoFinder output from all 47 species
MA_92489g0010	SPL2	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Mp1g10020.1	SPL8	transcription factor (SBP)	0.02	OrthoFinder output from all 47 species
Msp_g06307	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g08289	SPL3	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g12140	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g37559	AtSPL9, SPL9	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g45078	SPL7, ATSPL7	regulatory protein *(SPL7) of copper homeostasis &...	0.03	OrthoFinder output from all 47 species
Pir_g48701	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g22224	SPL2	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g48834	No alias	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g077920.4.1	SPL3, Solyc02g077920	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Spa_g38145	SPL10	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g38749	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g08757	SPL4	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e025234_P001	SPL2, Zm00001e025234	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048653	anther development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009692	ethylene metabolic process	IEP	HCCA
BP	GO:0009693	ethylene biosynthetic process	IEP	HCCA
BP	GO:0009694	jasmonic acid metabolic process	IEP	HCCA
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0010200	response to chitin	IEP	HCCA
BP	GO:0010243	response to organonitrogen compound	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
BP	GO:0015711	organic anion transport	IEP	HCCA
BP	GO:0015804	neutral amino acid transport	IEP	HCCA
BP	GO:0015824	proline transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0042538	hyperosmotic salinity response	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043449	cellular alkene metabolic process	IEP	HCCA
BP	GO:0043450	alkene biosynthetic process	IEP	HCCA
BP	GO:0046942	carboxylic acid transport	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:0120252	hydrocarbon metabolic process	IEP	HCCA
BP	GO:0120254	olefinic compound metabolic process	IEP	HCCA
BP	GO:0120255	olefinic compound biosynthetic process	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
BP	GO:1900673	olefin metabolic process	IEP	HCCA
BP	GO:1900674	olefin biosynthetic process	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	101	174

External Links

No external refs found!

AT5G50570 (SPL13, SPL13A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation