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  5. AT5G51780

AT5G51780


Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein


Gene families : OG0002401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G51780

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00269160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AMTR_s00002p00041060 evm_27.TU.AmTr_v1... Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00045230 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.1 OrthoFinder output from all 47 species
AMTR_s00063p00154030 ORG2, BHLH038,... Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.03 OrthoFinder output from all 47 species
AT1G12540 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G25410 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
Ehy_g30730 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020561001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
GSVIVT01022881001 No alias Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.02 OrthoFinder output from all 47 species
Gb_26737 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_26744 No alias transcription factor (bHLH) 0.01 OrthoFinder output from all 47 species
MA_141559g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_14352g0010 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
MA_14544g0010 No alias transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
MA_321195g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_331265g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_68586g0010 BHLH101 transcription factor (bHLH). iron/copper homeostasis... 0.04 OrthoFinder output from all 47 species
MA_8008760g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_93509g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_938775g0010 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Pir_g47256 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g50631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g078130.3.1 Solyc02g078130 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc03g114230.2.1 Solyc03g114230 Transcription factor bHLH162 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc03g114237.1.1 Solyc03g114237 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc04g056535.1.1 Solyc04g056535 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc06g035490.3.1 Solyc06g035490 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc09g074805.1.1 Solyc09g074805 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Solyc10g008260.2.1 Solyc10g008260 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc10g079650.2.1 BHLH100, Solyc10g079650 transcription factor (bHLH). iron/copper homeostasis... 0.05 OrthoFinder output from all 47 species
Solyc10g079660.3.1 ORG2, BHLH038,... transcription factor (bHLH). iron/copper homeostasis... 0.04 OrthoFinder output from all 47 species
Solyc10g079680.3.1 ORG2, BHLH038,... transcription factor (bHLH). iron/copper homeostasis... 0.03 OrthoFinder output from all 47 species
Solyc12g010585.1.1 Solyc12g010585 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e018588_P001 BHLH100, Zm00001e018588 transcription factor (bHLH). iron/copper homeostasis... 0.05 OrthoFinder output from all 47 species
Zm00001e028309_P001 ORG3, BHLH039,... transcription factor (bHLH). iron/copper homeostasis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription TAS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0005545 1-phosphatidylinositol binding IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005881 cytoplasmic microtubule IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0007154 cell communication IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0008493 tetracycline transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009267 cellular response to starvation IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0009691 cytokinin biosynthetic process IEP HCCA
BP GO:0009804 coumarin metabolic process IEP HCCA
BP GO:0009805 coumarin biosynthetic process IEP HCCA
BP GO:0009806 lignan metabolic process IEP HCCA
BP GO:0009807 lignan biosynthetic process IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010106 cellular response to iron ion starvation IEP HCCA
BP GO:0010150 leaf senescence IEP HCCA
BP GO:0010167 response to nitrate IEP HCCA
MF GO:0010283 pinoresinol reductase activity IEP HCCA
BP GO:0010311 lateral root formation IEP HCCA
BP GO:0010359 regulation of anion channel activity IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0015665 alcohol transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015706 nitrate transmembrane transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016128 phytosteroid metabolic process IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
BP GO:0016131 brassinosteroid metabolic process IEP HCCA
BP GO:0016132 brassinosteroid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031110 regulation of microtubule polymerization or depolymerization IEP HCCA
BP GO:0031111 negative regulation of microtubule polymerization or depolymerization IEP HCCA
BP GO:0031113 regulation of microtubule polymerization IEP HCCA
BP GO:0031115 negative regulation of microtubule polymerization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0031333 negative regulation of protein-containing complex assembly IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
BP GO:0031669 cellular response to nutrient levels IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032272 negative regulation of protein polymerization IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0032886 regulation of microtubule-based process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044070 regulation of monoatomic anion transport IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048768 root hair cell tip growth IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0051494 negative regulation of cytoskeleton organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0055028 cortical microtubule IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0070507 regulation of microtubule cytoskeleton organization IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
BP GO:0090693 plant organ senescence IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098661 inorganic anion transmembrane transport IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
BP GO:1902025 nitrate import IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
BP GO:1902904 negative regulation of supramolecular fiber organization IEP HCCA
BP GO:1903959 regulation of monoatomic anion transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 3 54
No external refs found!