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AT5G55540 (LOP1, TRN1)


Aliases : LOP1, TRN1

Description : tornado 1


Gene families : OG0000350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55540

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene68465.t1 LOP1, TRN1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G020700.1 Ceric.14G020700 not classified & original description: pacid=50633884... 0.03 OrthoFinder output from all 47 species
Dac_g05356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g44747 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_41768 LOP1, TRN1 Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g41660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0009825 multidimensional cell growth IMP Interproscan
BP GO:0009855 determination of bilateral symmetry RCA Interproscan
BP GO:0009926 auxin polar transport IDA Interproscan
BP GO:0009926 auxin polar transport IGI Interproscan
BP GO:0009933 meristem structural organization IMP Interproscan
BP GO:0009956 radial pattern formation IMP Interproscan
BP GO:0009965 leaf morphogenesis IMP Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010073 meristem maintenance RCA Interproscan
BP GO:0010305 leaf vascular tissue pattern formation IMP Interproscan
BP GO:0010540 basipetal auxin transport IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
BP GO:0006264 mitochondrial DNA replication IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008187 poly-pyrimidine tract binding IEP HCCA
MF GO:0008266 poly(U) RNA binding IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
CC GO:0031209 SCAR complex IEP HCCA
BP GO:0032042 mitochondrial DNA metabolic process IEP HCCA
BP GO:0033258 plastid DNA metabolic process IEP HCCA
BP GO:0033259 plastid DNA replication IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0090342 obsolete regulation of cell aging IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR032171 COR 757 931
No external refs found!