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  5. AT5G55550

AT5G55550


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55550

Target Alias Description ECC score Gene Family Method Actions
Adi_g112695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g32654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010823 No alias not classified & original description: CDS=686-1789 0.02 OrthoFinder output from all 47 species
Azfi_s0288.g063213 No alias not classified & original description: CDS=60-1199 0.02 OrthoFinder output from all 47 species
Cba_g19823 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.27 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre07.g330300 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g06314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g37000.2 LOC_Os06g37000 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os07g39560.3 LOC_Os07g39560 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os08g23120.1 LOC_Os08g23120 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g02226 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g31256 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0114.g020928 No alias not classified & original description: CDS=213-1589 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0005513 detection of calcium ion IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005881 cytoplasmic microtubule IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008553 P-type proton-exporting transporter activity IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
CC GO:0009705 plant-type vacuole membrane IEP HCCA
BP GO:0009746 response to hexose IEP HCCA
BP GO:0009749 response to glucose IEP HCCA
BP GO:0009750 response to fructose IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009968 negative regulation of signal transduction IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010118 stomatal movement IEP HCCA
BP GO:0010119 regulation of stomatal movement IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010648 negative regulation of cell communication IEP HCCA
MF GO:0015662 P-type ion transporter activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0023057 negative regulation of signaling IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0033549 MAP kinase phosphatase activity IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
BP GO:0034284 response to monosaccharide IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043405 regulation of MAP kinase activity IEP HCCA
BP GO:0043407 negative regulation of MAP kinase activity IEP HCCA
BP GO:0043408 regulation of MAPK cascade IEP HCCA
BP GO:0043409 negative regulation of MAPK cascade IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048868 pollen tube development IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0051592 response to calcium ion IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
CC GO:0055028 cortical microtubule IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055075 potassium ion homeostasis IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140358 P-type transmembrane transporter activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1902532 negative regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 75
IPR000504 RRM_dom 112 170
No external refs found!