AT5G55590 (QRT1)

Aliases : QRT1

Description : Pectin lyase-like superfamily protein

Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G55590

Target	Alias	Description	ECC score	Gene Family Method
Ala_g25187	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g26631	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene49142.t1	Aspi01Gene49142	pectin methylesterase & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.03G008900.1	Ceric.03G008900	pectin methylesterase & original description:...	0.01	OrthoFinder output from all 47 species
Ceric.15G045300.1	Ceric.15G045300	not classified & original description: pacid=50640021...	0.03	OrthoFinder output from all 47 species
MA_304854g0010	ATPE11, PE11	pectin methylesterase	0.01	OrthoFinder output from all 47 species
Ppi_g60345	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005618	cell wall	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
CC	GO:0009505	plant-type cell wall	ISS	Interproscan
BP	GO:0010393	galacturonan metabolic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	IDA	Interproscan
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0045490	pectin catabolic process	IMP	Interproscan
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	82	375

External Links

No external refs found!