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  5. AT5G56200

AT5G56200


Description : C2H2 type zinc finger transcription factor family


Gene families : OG0000238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56200
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00073930 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
AT2G26940 No alias C2H2-type zinc finger family protein 0.03 OrthoFinder output from all 47 species
AT2G28710 No alias C2H2-type zinc finger family protein 0.05 OrthoFinder output from all 47 species
AT3G60580 No alias C2H2-like zinc finger protein 0.01 OrthoFinder output from all 47 species
AT4G35610 No alias zinc finger (C2H2 type) family protein 0.05 OrthoFinder output from all 47 species
AT4G35700 No alias zinc finger (C2H2 type) family protein 0.05 OrthoFinder output from all 47 species
AT5G61470 No alias C2H2-like zinc finger protein 0.06 OrthoFinder output from all 47 species
Aop_g17539 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene26695.t1 Aspi01Gene26695 regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Dcu_g04853 No alias regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Dcu_g20034 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Dde_g10156 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Ehy_g19479 AZF2, ZF2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_16419 No alias C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g32220.1 CZF2, ZAT6,... C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os07g10870.1 LOC_Os07g10870 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g20580.1 AZF1, ZF1, LOC_Os08g20580 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os11g47630.1 LOC_Os11g47630 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_101494g0010 No alias C2H2 zinc finger transcription factor 0.01 OrthoFinder output from all 47 species
MA_30401g0010 No alias C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g10484 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Pir_g37245 No alias C2H2-type subclass ZAT transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g62772 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006193 No alias regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Solyc01g107170.2.1 CZF2, ZAT6,... C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc02g088670.1.1 Solyc02g088670 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc03g093870.1.1 Solyc03g093870 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc06g005180.1.1 Solyc06g005180 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc06g060740.3.1 Solyc06g060740 C2H2 zinc finger transcription factor 0.01 OrthoFinder output from all 47 species
Solyc12g088390.1.1 ZAT10, STZ,... C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0006814 sodium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
MF GO:0015386 potassium:proton antiporter activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0022821 solute:potassium antiporter activity IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
MF GO:0051139 metal cation:proton antiporter activity IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140828 metal cation:monoatomic cation antiporter activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!