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  5. AT5G56710

AT5G56710


Description : Ribosomal protein L31e family protein


Gene families : OG0000630 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000630_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56710

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00233860 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Adi_g022958 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g048332 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g00383 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g19969 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g24458 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g58224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07507 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Aop_g20599 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g33204 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g50669 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene42542.t1 Aspi01Gene42542 component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene45329.t1 Aspi01Gene45329 component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0108.g045264 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cba_g08010 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g08011 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g48803 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.13G014100.1 Ceric.13G014100 component *(eL31) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ceric.24G003800.1 Ceric.24G003800 component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020703.20 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Cre12.g489153 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Dac_g07183 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dac_g26744 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dac_g26920 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g30287 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Dcu_g38330 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g45156 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01015251001 No alias 60S ribosomal protein L31 OS=Nicotiana glutinosa 0.14 OrthoFinder output from all 47 species
GSVIVT01032061001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
Gb_05851 No alias component RPL31 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Gb_24728 No alias component RPL31 of LSU proteome component 0.08 OrthoFinder output from all 47 species
LOC_Os02g48660.1 LOC_Os02g48660 component RPL31 of LSU proteome component 0.13 OrthoFinder output from all 47 species
LOC_Os08g39500.1 LOC_Os08g39500 component RPL31 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Len_g03010 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g18251 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g35134 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_14317g0010 No alias component RPL31 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Mp7g18320.1 No alias component RPL31 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Ore_g40201 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g58237 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g58363 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c10_8090V3.1 Pp3c10_8090 Ribosomal protein L31e family protein 0.07 OrthoFinder output from all 47 species
Pp3c14_7550V3.1 Pp3c14_7550 Ribosomal protein L31e family protein 0.1 OrthoFinder output from all 47 species
Pp3c1_34390V3.1 Pp3c1_34390 Ribosomal protein L31e family protein 0.04 OrthoFinder output from all 47 species
Pp3c25_8980V3.1 Pp3c25_8980 Ribosomal protein L31e family protein 0.01 OrthoFinder output from all 47 species
Pp3c2_16490V3.1 Pp3c2_16490 Ribosomal protein L31e family protein 0.09 OrthoFinder output from all 47 species
Ppi_g02505 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g07763 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g16789 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g19345 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g22733 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g51464 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g55066 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05538 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g05859 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g36402 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g36403 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g39914 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g48531 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo268515 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Solyc05g008010.3.1 Solyc05g008010 component RPL31 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Solyc12g008720.2.1 Solyc12g008720 component RPL31 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Spa_g05504 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Spa_g23525 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g25963 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Tin_g42230 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e003520_P001 Zm00001e003520 component RPL31 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Zm00001e023413_P001 Zm00001e023413 component RPL31 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Zm00001e036927_P001 Zm00001e036927 component RPL31 of LSU proteome component 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000054 Ribosomal_L31e 10 91
No external refs found!