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  5. AT5G57290

AT5G57290


Description : 60S acidic ribosomal protein family


Gene families : OG0003859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G57290
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00182570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Adi_g053256 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aev_g06306 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g10658 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ala_g35024 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Als_g06587 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g41418 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Azfi_s0393.g067832 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cba_g20552 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.24G014300.1 Ceric.24G014300 component *(RPP3) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Dac_g46271 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dcu_g19693 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
GSVIVT01010910001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 OrthoFinder output from all 47 species
Gb_31564 No alias component RPP3 of LSU proteome component 0.22 OrthoFinder output from all 47 species
LOC_Os01g13080.1 LOC_Os01g13080 component RPP3 of LSU proteome component 0.12 OrthoFinder output from all 47 species
LOC_Os06g48780.1 LOC_Os06g48780 component RPP3 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Len_g49119 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Len_g58897 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Lfl_g04514 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g28349 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10431312g0020 No alias component RPP3 of LSU proteome component. component... 0.2 OrthoFinder output from all 47 species
Mp3g07010.1 No alias component RPP3 of LSU proteome component 0.21 OrthoFinder output from all 47 species
Msp_g00888 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g01622 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pir_g18566 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c21_16160V3.1 Pp3c21_16160 60S acidic ribosomal protein family 0.22 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006166 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g24981 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Smo105823 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Solyc07g009330.4.1 Solyc07g009330 component RPP3 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Spa_g04803 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Spa_g17718 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Tin_g00251 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e013180_P001 Zm00001e013180 component RPP3 of LSU proteome component 0.21 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006414 translational elongation ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034644 cellular response to UV IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071493 cellular response to UV-B IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!