AT5G57320 (VLN5)

Aliases : VLN5

Description : villin, putative

Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G57320

Target	Alias	Description	ECC score	Gene Family Method
Ala_g12394	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene30356.t1	VLN4, ATVLN4,...	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene30356.t2	VLN4, ATVLN4,...	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g13878	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.04G056400.1	ATVLN3, VLN3,...	villin actin-crosslinking factor & original description:...	0.04	OrthoFinder output from all 47 species
Cre12.g524400	VLN4, ATVLN4	No description available	0.04	OrthoFinder output from all 47 species
Ehy_g09994	ATVLN3, VLN3	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10002	ATVLN3, VLN3	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01024752001	VLN1, ATVLN1	Cytoskeleton.microfilament network.actin...	0.03	OrthoFinder output from all 47 species
LOC_Os03g24220.2	ATVLN2, VLN2,...	villin actin-crosslinking factor	0.03	OrthoFinder output from all 47 species
LOC_Os04g51440.1	VLN4, ATVLN4,...	villin actin-crosslinking factor	0.05	OrthoFinder output from all 47 species
MA_10430359g0030	ATVLN2, VLN2	Villin-2 OS=Oryza sativa subsp. japonica...	0.05	OrthoFinder output from all 47 species
Msp_g14171	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g31948	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g12930	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017480	VLN4, ATVLN4	villin actin-crosslinking factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g29924	No alias	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g079400.3.1	ATVLN2, VLN2,...	villin actin-crosslinking factor	0.06	OrthoFinder output from all 47 species
Solyc10g080100.3.1	ATVLN2, VLN2,...	villin actin-crosslinking factor	0.02	OrthoFinder output from all 47 species
Tin_g05651	ATVLN2, VLN2	villin acTin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g41270	ATVLN3, VLN3	villin acTin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001712_P002	ATVLN2, VLN2,...	villin actin-crosslinking factor	0.02	OrthoFinder output from all 47 species
Zm00001e007033_P001	VLN4, ATVLN4,...	villin actin-crosslinking factor	0.04	OrthoFinder output from all 47 species
Zm00001e018617_P001	ATVLN2, VLN2,...	villin actin-crosslinking factor	0.02	OrthoFinder output from all 47 species
Zm00001e038175_P001	ATVLN2, VLN2,...	villin actin-crosslinking factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003779	actin binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	ISS	Interproscan
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003785	actin monomer binding	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005884	actin filament	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0009306	protein secretion	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009826	unidimensional cell growth	IEP	HCCA
BP	GO:0009827	plant-type cell wall modification	IEP	HCCA
BP	GO:0009860	pollen tube growth	IEP	HCCA
BP	GO:0009932	cell tip growth	IEP	HCCA
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030036	actin cytoskeleton organization	IEP	HCCA
CC	GO:0030133	transport vesicle	IEP	HCCA
CC	GO:0030427	site of polarized growth	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	HCCA
CC	GO:0035838	growing cell tip	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
CC	GO:0045177	apical part of cell	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048868	pollen tube development	IEP	HCCA
CC	GO:0051286	cell tip	IEP	HCCA
CC	GO:0060187	cell pole	IEP	HCCA
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	HCCA
CC	GO:0070382	exocytic vesicle	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071692	protein localization to extracellular region	IEP	HCCA
BP	GO:0080092	regulation of pollen tube growth	IEP	HCCA
CC	GO:0090404	pollen tube tip	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099503	secretory vesicle	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003128	Villin_headpiece	927	962
IPR007123	Gelsolin-like_dom	149	209
IPR007123	Gelsolin-like_dom	643	714
IPR007123	Gelsolin-like_dom	269	333
IPR007123	Gelsolin-like_dom	29	111

External Links

No external refs found!

AT5G57320 (VLN5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation