AT5G58620

Description : zinc finger (CCCH-type) family protein

Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G58620

Target	Alias	Description	ECC score	Gene Family Method
Adi_g049127	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Adi_g049591	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g057405	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Adi_g075797	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Adi_g081004	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ala_g22406	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Als_g60899	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aspi01Gene04702.t1	Aspi01Gene04702	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Aspi01Gene14185.t1	Aspi01Gene14185	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Aspi01Gene30050.t1	Aspi01Gene30050	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Cba_g24660	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ceric.04G078500.1	Ceric.04G078500	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Cre07.g326150	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.03	OrthoFinder output from all 47 species
Dac_g02872	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Dac_g08831	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Dcu_g07562	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Dcu_g16518	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Dde_g03949	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Dde_g25533	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ehy_g18498	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
LOC_Os05g03760.1	LOC_Os05g03760	mRNA-binding regulatory factor (TZF)	0.03	OrthoFinder output from all 47 species
LOC_Os07g38090.2	LOC_Os07g38090	mRNA-binding regulatory factor (TZF)	0.03	OrthoFinder output from all 47 species
Len_g15350	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Len_g28700	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_98656g0010	No alias	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Msp_g04934	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Nbi_g10512	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Nbi_g10809	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Nbi_g10925	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Ore_g25247	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ore_g35856	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Pir_g39344	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ppi_g10785	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ppi_g43622	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Sam_g04991	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Solyc01g087170.3.1	Solyc01g087170	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Spa_g10379	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Spa_g31285	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Tin_g14923	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006865	amino acid transport	None	Extended
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0015849	organic acid transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0043090	amino acid import	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003866	3-phosphoshikimate 1-carboxyvinyltransferase activity	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0007263	nitric oxide mediated signal transduction	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
BP	GO:0009423	chorismate biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0015385	sodium:proton antiporter activity	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0018920	glyphosate metabolic process	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042542	response to hydrogen peroxide	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046417	chorismate metabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0051139	metal cation:proton antiporter activity	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
MF	GO:0140828	metal cation:monoatomic cation antiporter activity	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	254	274
IPR020683	DUF3447	53	123

External Links

No external refs found!

AT5G58620

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation