AT5G59450

Description : GRAS family transcription factor

Gene families : OG0000181 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G59450

Target	Alias	Description	ECC score	Gene Family Method
Ala_g29168	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Ala_g36937	No alias	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g23035	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g26224	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Als_g50761	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g60766	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g14981	No alias	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g14022	No alias	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g27518	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g29920	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g30977	No alias	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g52700	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g70607	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene32542.t1	ATGRAS2, SCL14,...	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene65531.t1	ATGRAS2, SCL14,...	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g72741	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g14499	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g15292	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g16966	No alias	GRAS-type transcription factor & original description: none	0.14	OrthoFinder output from all 47 species
Dac_g18741	No alias	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g24468	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g24987	No alias	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g30355	No alias	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g35554	No alias	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g39802	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g42821	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g45854	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g18847	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g34112	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g47760	No alias	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g13346	No alias	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01016520001	No alias	RNA biosynthesis.transcriptional activation.GRAS...	0.06	OrthoFinder output from all 47 species
GSVIVT01016521001	ATGRAS2, SCL14, GRAS2	RNA biosynthesis.transcriptional activation.GRAS...	0.12	OrthoFinder output from all 47 species
GSVIVT01016522001	ATGRAS2, SCL14, GRAS2	RNA biosynthesis.transcriptional activation.GRAS...	0.03	OrthoFinder output from all 47 species
GSVIVT01024935001	ATGRAS2, SCL14, GRAS2	RNA biosynthesis.transcriptional activation.GRAS...	0.03	OrthoFinder output from all 47 species
Gb_29764	No alias	transcription factor (GRAS)	0.03	OrthoFinder output from all 47 species
LOC_Os04g50060.1	ATGRAS2, SCL14,...	transcription factor (GRAS)	0.04	OrthoFinder output from all 47 species
LOC_Os11g47870.1	LOC_Os11g47870	transcription factor (GRAS)	0.02	OrthoFinder output from all 47 species
Len_g08381	No alias	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g03724	No alias	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g09779	No alias	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g40509	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14209	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g63196	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g06907	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g17271	No alias	GRAS-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Ppi_g25190	No alias	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g28846	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g62353	No alias	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g62859	No alias	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g100200.3.1	ATGRAS2, SCL14,...	transcription factor (GRAS)	0.08	OrthoFinder output from all 47 species
Solyc10g086530.1.1	Solyc10g086530	transcription factor (GRAS)	0.07	OrthoFinder output from all 47 species
Spa_g07365	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g09266	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g16511	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g26523	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g52612	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g56681	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g02931	No alias	not classified & original description: none	0.1	OrthoFinder output from all 47 species
Tin_g19813	ATGRAS2, SCL14, GRAS2	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005202	TF_GRAS	224	598

External Links

No external refs found!

AT5G59450

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation