AT5G60450 (ARF4)

Aliases : ARF4

Description : auxin response factor 4

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G60450

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00200760	ARF4,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AMTR_s00025p00198750	ARF19, IAA22,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Adi_g011925	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g024483	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g075709	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g084657	ARF19, IAA22, ARF11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g089250	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g103241	TIR5, MSG1,...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aev_g06750	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02130	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14726	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g22849	ARF10	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g07961	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g22075	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene20867.t1	TIR5, MSG1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene45721.t2	ARF6, Aspi01Gene45721	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0005.g009155	ARF6	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0013.g013413	ARF10	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0038.g026103	ARF6	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Azfi_s0384.g067487	ARF8, ATARF8	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Cba_g07702	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g78264	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.18G034300.1	ARF16, Ceric.18G034300	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.20G087500.1	ARF1, Ceric.20G087500	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g07132	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g17078	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19338	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g14113	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021552001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01025198001	ARF10	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_25507	ARF16	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_31132	ARF4	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Gb_39685	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g36054.1	ARF1, LOC_Os04g36054	transcription factor (ARF)	0.07	OrthoFinder output from all 47 species
Len_g10088	ARF10	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g11557	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_2237g0020	ARF16	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
MA_69854g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Msp_g15857	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g13886	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30357	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g42998	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g26452	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g27620	ARF4	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g33451	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g50454	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g19455	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: CDS=1-3501	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740	TIR5, MSG1,...	ARF-type transcription factor & original description: CDS=1-2400	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016361	ARF16	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sam_g28812	No alias	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo438333	TIR5, MSG1,...	Auxin response factor 11 OS=Oryza sativa subsp. indica	0.04	OrthoFinder output from all 47 species
Solyc02g077560.3.1	ARF3, ETT, Solyc02g077560	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Solyc06g075150.3.1	ARF16, Solyc06g075150	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Solyc08g082630.3.1	ARF9, Solyc08g082630	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc09g007810.4.1	ARF16, Solyc09g007810	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Spa_g20525	ARF6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g29541	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g47786	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e004554_P002	ARF16, Zm00001e004554	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e012670_P001	ARF16, Zm00001e012670	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e013061_P001	ARF16, Zm00001e013061	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e016366_P002	ARF11, Zm00001e016366	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e030325_P003	ARF6, Zm00001e030325	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e041248_P001	ARF10, Zm00001e041248	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010050	vegetative phase change	IGI	Interproscan
BP	GO:0010158	abaxial cell fate specification	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001763	morphogenesis of a branching structure	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010036	response to boron-containing substance	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010076	maintenance of floral meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0010154	fruit development	IEP	HCCA
BP	GO:0010223	secondary shoot formation	IEP	HCCA
BP	GO:0010346	shoot axis formation	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	HCCA
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
BP	GO:0015700	arsenite transport	IEP	HCCA
CC	GO:0016328	lateral plasma membrane	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0045165	cell fate commitment	IEP	HCCA
MF	GO:0045431	flavonol synthase activity	IEP	HCCA
BP	GO:0046685	response to arsenic-containing substance	IEP	HCCA
BP	GO:0046713	borate transport	IEP	HCCA
MF	GO:0046715	active borate transmembrane transporter activity	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048457	floral whorl morphogenesis	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048645	animal organ formation	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0080006	internode patterning	IEP	HCCA
BP	GO:0080029	cellular response to boron-containing substance levels	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:1902347	response to strigolactone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	177	278
IPR010525	ARF_dom	302	383

External Links

No external refs found!

AT5G60450 (ARF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation