AT5G61030 (GR-RBP3)

Aliases : GR-RBP3

Description : glycine-rich RNA-binding protein 3

Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G61030
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00251200	evm_27.TU.AmTr_v1...	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00013p00256900	GRP2, ATGRP2,...	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
Adi_g108265	No alias	RNA chaperone *(RZ1) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g111293	CCR2, ATGRP7,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g24232	GR-RBP4, GRP4	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01126	CCR2, ATGRP7,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g15096	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene04854.t1	CCR2, ATGRP7,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene18654.t1	GR-RBP3, Aspi01Gene18654	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene23447.t1	GRP2, ATGRP2,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0006.g009723	No alias	RNA chaperone *(RZ1) & original description: CDS=187-939	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009790	CCR2, ATGRP7,...	not classified & original description: CDS=136-657	0.04	OrthoFinder output from all 47 species
Azfi_s0051.g031234	No alias	not classified & original description: CDS=60-764	0.03	OrthoFinder output from all 47 species
Azfi_s0062.g035257	GRP2, ATGRP2, GR-RBP2	not classified & original description: CDS=192-584	0.03	OrthoFinder output from all 47 species
Azfi_s0468.g072856	GR-RBP4, GRP4	not classified & original description: CDS=1-582	0.03	OrthoFinder output from all 47 species
Cba_g10906	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.09G066000.1	Ceric.09G066000	RNA chaperone *(RZ1) & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.30G044500.1	Ceric.30G044500	RNA chaperone *(RZ1) & original description:...	0.06	OrthoFinder output from all 47 species
Dac_g02153	No alias	RNA chaperone *(RZ1) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g09825	GR-RBP4, GRP4	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g10484	GR-RBP4, GRP4	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g33383	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g27810	GR-RBP4, GRP4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g45667	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06522	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09025	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g14326	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01021024001	GRP2, ATGRP2, GR-RBP2	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
LOC_Os10g17454.1	GR-RBP3, LOC_Os10g17454	RNA editing factor (ORRM)	0.06	OrthoFinder output from all 47 species
Len_g03058	GR-RBP3	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05878	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10436424g0010	ATRZ-1A	RNA chaperone (RZ1\|GR-RBP)	0.04	OrthoFinder output from all 47 species
MA_27149g0010	GR-RBP3	RNA editing factor (ORRM)	0.03	OrthoFinder output from all 47 species
MA_77292g0010	No alias	RNA editing factor (ORRM)	0.04	OrthoFinder output from all 47 species
Mp6g08160.1	ATRZ-1A	RNA chaperone (RZ1\|GR-RBP)	0.03	OrthoFinder output from all 47 species
Pir_g03416	No alias	RNA chaperone *(RZ1) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g04318	No alias	RNA chaperone *(RZ1) & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c12_23410V3.1	GRP2, ATGRP2,...	glycine-rich RNA-binding protein 3	0.03	OrthoFinder output from all 47 species
Pp3c4_6610V3.1	GRP2, ATGRP2,...	glycine-rich RNA-binding protein 3	0.04	OrthoFinder output from all 47 species
Pp3c7_3360V3.1	CCR1, GR-RBP8,...	cold, circadian rhythm, and RNA binding 1	0.03	OrthoFinder output from all 47 species
Ppi_g41843	GR-RBP4, GRP4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g09618	No alias	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14736	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g25482	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo406315	GR-RBP4, GRP4	Glycine-rich RNA-binding protein 2, mitochondrial...	0.03	OrthoFinder output from all 47 species
Solyc01g104840.4.1	ATRZ-1A, Solyc01g104840	RNA chaperone (RZ1\|GR-RBP)	0.05	OrthoFinder output from all 47 species
Solyc10g081180.2.1	GR-RBP3, Solyc10g081180	RNA chaperone (RZ1\|GR-RBP). RNA editing factor (ORRM)	0.06	OrthoFinder output from all 47 species
Spa_g06392	No alias	RNA chaperone *(RZ1) & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g10567	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g10878	No alias	RNA chaperone *(RZ1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g12557	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g16011	ATRZ-1A	RNA chaperone *(RZ1) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g22222	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00653	GR-RBP5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g04956	No alias	RNA chaperone *(RZ1) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g27808	GR-RBP4, GRP4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g30660	GR-RBP3	RNA ediTing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e028481_P002	GRP2, ATGRP2,...	RNA chaperone (RZ1\|GR-RBP). RNA editing factor (ORRM)	0.05	OrthoFinder output from all 47 species
Zm00001e033010_P001	Zm00001e033010	RNA chaperone (RZ1\|GR-RBP)	0.03	OrthoFinder output from all 47 species
Zm00001e040294_P001	Zm00001e040294	RNA editing factor (ORRM)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	IDA	Interproscan
MF	GO:0005524	ATP binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006626	protein targeting to mitochondrion	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006839	mitochondrial transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034968	histone lysine methylation	RCA	Interproscan
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070585	protein localization to mitochondrion	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072655	establishment of protein localization to mitochondrion	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	42	112

External Links

No external refs found!

AT5G61030 (GR-RBP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation