AT5G61130 (PDCB1)

Aliases : PDCB1

Description : plasmodesmata callose-binding protein 1

Gene families : OG0000198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000198_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G61130

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00250830	evm_27.TU.AmTr_v1...	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00021p00163410	PDCB5,...	PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
AMTR_s00044p00136030	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	OrthoFinder output from all 47 species
AMTR_s00086p00121550	evm_27.TU.AmTr_v1...	Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
AMTR_s00092p00035570	evm_27.TU.AmTr_v1...	Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT1G29380	No alias	Carbohydrate-binding X8 domain superfamily protein	0.04	OrthoFinder output from all 47 species
AT2G30933	No alias	Carbohydrate-binding X8 domain superfamily protein	0.05	OrthoFinder output from all 47 species
Aev_g18704	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g38371	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g18859	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g22572	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g28990	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g33123	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08617	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g12127	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09349	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g09515	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g22214	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g38386	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene08830.t1	Aspi01Gene08830	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene17170.t1	Aspi01Gene17170	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene41037.t1	Aspi01Gene41037	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g00460	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g05481	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.03G019400.1	Ceric.03G019400	not classified & original description: pacid=50572611...	0.05	OrthoFinder output from all 47 species
Ceric.05G008700.1	Ceric.05G008700	not classified & original description: pacid=50577231...	0.04	OrthoFinder output from all 47 species
Ceric.16G030300.1	Ceric.16G030300	not classified & original description: pacid=50589646...	0.04	OrthoFinder output from all 47 species
Ceric.27G013100.1	Ceric.27G013100	not classified & original description: pacid=50605460...	0.08	OrthoFinder output from all 47 species
Ceric.37G009700.1	Ceric.37G009700	not classified & original description: pacid=50616747...	0.05	OrthoFinder output from all 47 species
Dac_g03506	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g04433	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g07234	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g08788	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g16407	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g37072	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g37975	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g00456	PDCB2, E13L3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g04537	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g12197	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Dde_g28049	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10392	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01007873001	PDCB3	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana	0.08	OrthoFinder output from all 47 species
GSVIVT01014068001	No alias	Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea	0.03	OrthoFinder output from all 47 species
GSVIVT01021412001	No alias	Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum	0.03	OrthoFinder output from all 47 species
Gb_00481	No alias	Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Gb_02732	No alias	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Gb_14999	No alias	Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Gb_15010	No alias	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g55820.1	LOC_Os01g55820	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os03g54910.1	PDCB2, E13L3,...	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os04g58555.1	LOC_Os04g58555	Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum...	0.03	OrthoFinder output from all 47 species
LOC_Os07g40940.1	PDCB2, E13L3,...	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Len_g04122	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Len_g14015	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g35967	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g56789	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
MA_158566g0010	No alias	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_210389g0010	No alias	PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis...	0.1	OrthoFinder output from all 47 species
MA_9796357g0010	No alias	Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Msp_g18020	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g24416	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g29067	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g30042	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g10702	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g41952	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g55633	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g16036	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g33619	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g36355	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g63831	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021452	No alias	not classified & original description: CDS=113-766	0.03	OrthoFinder output from all 47 species
Sam_g24668	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g010310.4.1	Solyc01g010310	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Solyc04g058080.3.1	Solyc04g058080	Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
Solyc05g012380.3.1	PDCB4, Solyc05g012380	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis...	0.12	OrthoFinder output from all 47 species
Solyc05g016390.4.1	Solyc05g016390	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Solyc07g056310.3.1	Solyc07g056310	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc09g091920.3.1	Solyc09g091920	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis...	0.11	OrthoFinder output from all 47 species
Spa_g50712	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g07424	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g14190	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e005720_P001	PDCB2, E13L3,...	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e022608_P001	Zm00001e022608	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e032121_P001	PDCB1, Zm00001e032121	Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Zm00001e037118_P002	PDCB5, Zm00001e037118	PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	RCA	Interproscan
MF	GO:0001872	(1->3)-beta-D-glucan binding	IDA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	RCA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	RCA	Interproscan
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009664	plant-type cell wall organization	RCA	Interproscan
BP	GO:0009740	gibberellic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
CC	GO:0030054	cell junction	None	Extended
MF	GO:0030246	carbohydrate binding	None	Extended
MF	GO:0030247	polysaccharide binding	IDA	Interproscan
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031225	obsolete anchored component of membrane	TAS	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033037	polysaccharide localization	None	Extended
BP	GO:0042545	cell wall modification	RCA	Interproscan
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
CC	GO:0046658	obsolete anchored component of plasma membrane	IDA	Interproscan
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0052386	cell wall thickening	None	Extended
BP	GO:0052543	callose deposition in cell wall	IMP	Interproscan
BP	GO:0052545	callose localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0001708	cell fate specification	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	HCCA
MF	GO:0030570	pectate lyase activity	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012946	X8	20	91

External Links

No external refs found!

AT5G61130 (PDCB1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation