1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G61170

AT5G61170


Description : Ribosomal protein S19e family protein


Gene families : OG0000873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000873_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G61170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00207750 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 OrthoFinder output from all 47 species
AMTR_s00110p00069670 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 OrthoFinder output from all 47 species
Adi_g019924 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g101823 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g107544 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Adi_g122694 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g125386 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g125842 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ala_g00428 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ala_g20886 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Als_g06716 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g07025 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Als_g16944 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Als_g60492 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aob_g12955 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g00927 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.33 OrthoFinder output from all 47 species
Aop_g14490 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Aop_g39336 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g57031 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aspi01Gene53442.t1 Aspi01Gene53442 component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0007.g011210 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.21 OrthoFinder output from all 47 species
Azfi_s0014.g013681 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Cba_g21371 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cba_g29626 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Cba_g69716 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.11G061300.1 Ceric.11G061300 component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ceric.24G077600.1 Ceric.24G077600 component *(eS19) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021017.6 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 OrthoFinder output from all 47 species
Cre02.g106600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.55 OrthoFinder output from all 47 species
Dac_g02533 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Dac_g22936 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Dac_g28531 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g21083 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g29784 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g30993 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.22 OrthoFinder output from all 47 species
Dcu_g32936 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dde_g00231 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dde_g03627 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g00300 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ehy_g06282 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01007908001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.36 OrthoFinder output from all 47 species
GSVIVT01012199001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.48 OrthoFinder output from all 47 species
Gb_40460 No alias component RPS19 of SSU proteome 0.28 OrthoFinder output from all 47 species
LOC_Os03g31090.1 LOC_Os03g31090 component RPS19 of SSU proteome 0.51 OrthoFinder output from all 47 species
Len_g26613 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Len_g33209 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g15415 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g20323 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Lfl_g21216 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Lfl_g31872 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
MA_10427917g0010 No alias component RPS19 of SSU proteome 0.34 OrthoFinder output from all 47 species
MA_7685779g0010 No alias component RPS19 of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_9301411g0010 No alias component RPS19 of SSU proteome 0.18 OrthoFinder output from all 47 species
Mp1g27380.1 No alias component RPS19 of SSU proteome 0.41 OrthoFinder output from all 47 species
Msp_g22057 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Msp_g37856 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Msp_g43925 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.18 OrthoFinder output from all 47 species
Nbi_g03378 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Nbi_g27238 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Ore_g34855 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Pir_g00273 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Pir_g00747 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Pir_g36446 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g62458 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c14_19640V3.1 Pp3c14_19640 Ribosomal protein S19e family protein 0.19 OrthoFinder output from all 47 species
Pp3c17_15200V3.1 Pp3c17_15200 Ribosomal protein S19e family protein 0.21 OrthoFinder output from all 47 species
Pp3c1_28780V3.1 Pp3c1_28780 Ribosomal protein S19e family protein 0.32 OrthoFinder output from all 47 species
Pp3c27_2780V3.1 Pp3c27_2780 Ribosomal protein S19e family protein 0.04 OrthoFinder output from all 47 species
Pp3c2_10060V3.1 Pp3c2_10060 Ribosomal protein S19e family protein 0.27 OrthoFinder output from all 47 species
Ppi_g00396 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ppi_g02540 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g10706 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g19866 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g26502 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g28533 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ppi_g41385 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g56011 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019638 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g12907 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Sam_g14851 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g22603 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.31 OrthoFinder output from all 47 species
Sam_g22812 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g27047 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g30614 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Sam_g31814 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.32 OrthoFinder output from all 47 species
Sam_g42204 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Sam_g46027 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g47692 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo153225 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.29 OrthoFinder output from all 47 species
Solyc03g115360.3.1 Solyc03g115360 component RPS19 of SSU proteome 0.47 OrthoFinder output from all 47 species
Solyc12g039120.2.1 Solyc12g039120 component RPS19 of SSU proteome 0.45 OrthoFinder output from all 47 species
Spa_g02912 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Spa_g11663 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.25 OrthoFinder output from all 47 species
Spa_g33409 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Spa_g34367 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Spa_g41565 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.26 OrthoFinder output from all 47 species
Spa_g43576 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Tin_g14125 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.24 OrthoFinder output from all 47 species
Tin_g40581 No alias component *(eS19) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e002011_P001 Zm00001e002011 component RPS19 of SSU proteome 0.51 OrthoFinder output from all 47 species
Zm00001e038053_P003 Zm00001e038053 component RPS19 of SSU proteome 0.54 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034644 cellular response to UV IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071493 cellular response to UV-B IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 6 140
No external refs found!