AT5G62260

Description : AT hook motif DNA-binding family protein

Gene families : OG0000263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000263_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G62260
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
Ala_g38358	No alias	AHL clade-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g18910	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os11g05160.1	ATAHL1, AHL1,...	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os12g05200.1	ATAHL1, AHL1,...	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Smo410086	No alias	AT-hook motif nuclear-localized protein 10...	0.02	OrthoFinder output from all 47 species
Tin_g05045	ATAHL1, AHL1	AHL clade-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e010074_P004	Zm00001e010074	AT-hook motif nuclear-localized protein 10...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0080060	integument development	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005175	PPC_dom	162	275

External Links

No external refs found!

AT5G62260

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation