AT5G62430 (CDF1)

Aliases : CDF1

Description : cycling DOF factor 1

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G62430

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00264070	CDF3,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00119p00099150	CDF2,...	RNA biosynthesis.transcriptional activation.C2C2...	0.06	OrthoFinder output from all 47 species
Als_g11020	CDF2	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene13553.t1	CDF3, Aspi01Gene13553	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0054.g033832	CDF3	transcription factor *(DOF) & original description: CDS=354-1853	0.03	OrthoFinder output from all 47 species
Azfi_s1074.g096912	TMO6	transcription factor *(DOF) & original description: CDS=1-1176	0.02	OrthoFinder output from all 47 species
Cre12.g521150	CDF2	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
Dde_g20913	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g25853	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g26661	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007992001	CDF1	RNA biosynthesis.transcriptional activation.C2C2...	0.06	OrthoFinder output from all 47 species
GSVIVT01011433001	CDF2	RNA biosynthesis.transcriptional activation.C2C2...	0.07	OrthoFinder output from all 47 species
GSVIVT01019969001	CDF1	RNA biosynthesis.transcriptional activation.C2C2...	0.06	OrthoFinder output from all 47 species
GSVIVT01025119001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	OrthoFinder output from all 47 species
GSVIVT01029943001	CDF3	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
LOC_Os03g07360.1	CDF3, LOC_Os03g07360	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
LOC_Os03g38870.1	LOC_Os03g38870	transcription factor (DOF)	0.07	OrthoFinder output from all 47 species
Len_g30040	CDF2	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g16351	OBP4	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g26476	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42354	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g03112	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g18787	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g19752	OBP4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g13474	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g53532	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g61765	DAG1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023228	No alias	transcription factor *(DOF) & original description: CDS=1-1353	0.03	OrthoFinder output from all 47 species
Sam_g36281	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g41707	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g067230.3.1	CDF2, Solyc02g067230	transcription factor (DOF)	0.08	OrthoFinder output from all 47 species
Solyc02g088070.3.1	CDF3, Solyc02g088070	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc05g007880.4.1	CDF1, Solyc05g007880	Cyclic dof factor 2 OS=Arabidopsis thaliana...	0.14	OrthoFinder output from all 47 species
Solyc06g069760.3.1	CDF3, Solyc06g069760	transcription factor (DOF)	0.08	OrthoFinder output from all 47 species
Solyc11g066050.1.1	Solyc11g066050	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Tin_g08597	OBP3	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g23610	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e010454_P001	TMO6, Zm00001e010454	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e017319_P001	CDF2, Zm00001e017319	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e035074_P001	TMO6, Zm00001e035074	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0040034	regulation of development, heterochronic	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048506	regulation of timing of meristematic phase transition	None	Extended
BP	GO:0048509	regulation of meristem development	None	Extended
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IMP	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0009661	chromoplast organization	IEP	HCCA
BP	GO:0016119	carotene metabolic process	IEP	HCCA
BP	GO:0016120	carotene biosynthetic process	IEP	HCCA
BP	GO:0042214	terpene metabolic process	IEP	HCCA
BP	GO:0046246	terpene biosynthetic process	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:0120252	hydrocarbon metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	52	108

External Links

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AT5G62430 (CDF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation