AT5G62610

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G62610

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00267570	UNE12,...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
AMTR_s00013p00245920	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
AMTR_s00065p00184910	LRL1,...	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
AMTR_s00079p00137860	BEE3,...	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
AT5G48560	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g042065	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g056779	ATRSL1, RSL1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g12396	HEC1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30860	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g13155	HEC1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g29567	CIB5	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aob_g30603	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g64342	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene04431.t1	PIF3, POC1,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene28112.t1	PIF3, POC1,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene29543.t2	Aspi01Gene29543	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene54623.t1	LRL3, Aspi01Gene54623	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0104.g044857	SPT	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cba_g08736	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.04G045500.1	Ceric.04G045500	bHLH-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.08G020500.1	RSL2, Ceric.08G020500	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.16G026700.1	Ceric.16G026700	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Ceric.1Z049600.1	Ceric.1Z049600	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Ceric.32G068300.1	Ceric.32G068300	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Dac_g22699	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g28874	CIB1	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Dde_g00562	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g43893	HEC1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g18802	No alias	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
GSVIVT01013553001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01021787001	UNE12	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
GSVIVT01023783001	CIB1	External stimuli response.light.UV-A/blue...	0.04	OrthoFinder output from all 47 species
GSVIVT01026056001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
GSVIVT01033356001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.05	OrthoFinder output from all 47 species
LOC_Os01g68700.1	LOC_Os01g68700	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
LOC_Os02g56140.1	SPT, LOC_Os02g56140	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os06g06900.1	SPT, LOC_Os06g06900	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os06g09370.2	LRL3, LOC_Os06g09370	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os07g08440.1	UNE12, LOC_Os07g08440	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Msp_g11113	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g24696	HEC1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g16867	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g25662	CIB1	regulatory protein (CIB) of blue light perception &...	0.06	OrthoFinder output from all 47 species
Pir_g01002	LRL1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g06619	CIB1	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Pir_g58445	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Pnu_g17173	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g29684	HEC2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g39212	RHD6	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011925	HEC2	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Smo118904	ALC	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Smo419388	RSL2	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Solyc03g113560.4.1	Solyc03g113560	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc06g008030.3.1	PIL5, PIF1,...	transcription factor (bHLH). PIF red/far-red light...	0.03	OrthoFinder output from all 47 species
Solyc12g100140.3.1	Solyc12g100140	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g24430	HEC1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g40542	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e011866_P002	UNE12, Zm00001e011866	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e018946_P001	Zm00001e018946	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e028489_P003	Zm00001e028489	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e032950_P002	UNE12, Zm00001e032950	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e035219_P001	Zm00001e035219	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
MF	GO:0004034	aldose 1-epimerase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006012	galactose metabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016882	cyclo-ligase activity	IEP	HCCA
MF	GO:0030272	5-formyltetrahydrofolate cyclo-ligase activity	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	163	210

External Links

No external refs found!

AT5G62610

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation