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  5. AT5G63260

AT5G63260


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G63260

Target Alias Description ECC score Gene Family Method Actions
Adi_g057426 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene36780.t1 ZFN1, Aspi01Gene36780 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene59535.t1 ZFN1, Aspi01Gene59535 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pir_g02233 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pnu_g22509 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Tin_g15362 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000795 synaptonemal complex IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
BP GO:0006892 post-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006896 Golgi to vacuole transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010351 lithium ion transport IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0045324 late endosome to vacuole transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
MF GO:0051139 metal cation:proton antiporter activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0052545 callose localization IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140828 metal cation:monoatomic cation antiporter activity IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 386 406
IPR000571 Znf_CCCH 103 127
IPR000571 Znf_CCCH 153 174
IPR000571 Znf_CCCH 196 220
No external refs found!