AT5G64140 (RPS28)

Aliases : RPS28

Description : ribosomal protein S28

Gene families : OG0006085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006085_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G64140
Cluster	HCCA: Cluster_122

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0280.g062329	No alias	component *(eS28) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.01G107900.1	Ceric.01G107900	component *(eS28) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cre12.g510450	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
LOC_Os10g27174.1	LOC_Os10g27174	component RPS28 of SSU proteome	0.26	OrthoFinder output from all 47 species
Mp3g15160.1	No alias	component RPS28 of SSU proteome	0.13	OrthoFinder output from all 47 species
Pp3c14_19610V3.1	Pp3c14_19610	Nucleic acid-binding, OB-fold-like protein	0.06	OrthoFinder output from all 47 species
Pp3c5_6000V3.1	Pp3c5_6000	Nucleic acid-binding, OB-fold-like protein	0.07	OrthoFinder output from all 47 species
Smo170205	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Solyc02g021400.2.1	RPS28, Solyc02g021400	component RPS28 of SSU proteome	0.15	OrthoFinder output from all 47 species
Solyc10g078630.2.1	RPS28, Solyc10g078630	component RPS28 of SSU proteome	0.14	OrthoFinder output from all 47 species
Zm00001e000507_P001	Zm00001e000507	component RPS28 of SSU proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0003735	structural constituent of ribosome	IBA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006407	rRNA export from nucleus	IBA	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051029	rRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097064	ncRNA export from nucleus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
BP	GO:0000741	karyogamy	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0010197	polar nucleus fusion	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
CC	GO:0015030	Cajal body	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	4	63

External Links

No external refs found!

AT5G64140 (RPS28)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation