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  5. AT5G67250

AT5G67250 (VFB4, SKIP2)


Aliases : VFB4, SKIP2

Description : SKP1/ASK1-interacting protein 2


Gene families : OG0001029 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001029_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G67250
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0312.g064187 VFB3 substrate adaptor *(VFB) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Nbi_g06156 VFB4, SKIP2 substrate adaptor *(VFB) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ppi_g01000 VFB4, SKIP2 substrate adaptor *(VFB) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
MF GO:0008301 DNA binding, bending IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
BP GO:0010030 positive regulation of seed germination IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0018345 protein palmitoylation IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:1900140 regulation of seedling development IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 45 82
IPR001611 Leu-rich_rpt 132 155
IPR001611 Leu-rich_rpt 157 177
No external refs found!