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  5. ATCG00180

ATCG00180 (RPOC1)


Aliases : RPOC1

Description : DNA-directed RNA polymerase family protein


Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00180
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Aev_g25869 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.38 OrthoFinder output from all 47 species
Als_g17479 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.06 OrthoFinder output from all 47 species
Cba_g01180 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.13 OrthoFinder output from all 47 species
Ceric.07G092700.1 RPOC1, Ceric.07G092700 not classified & original description: pacid=50627572... 0.06 OrthoFinder output from all 47 species
Ceric.29G004700.1 RPOC1, Ceric.29G004700 not classified & original description: pacid=50625659... 0.13 OrthoFinder output from all 47 species
Ceric.29G004800.1 RPOC1, Ceric.29G004800 core component *(RpoC1) of plastid-encoded RNA... 0.12 OrthoFinder output from all 47 species
Ceric.33G023000.1 RPOC1, Ceric.33G023000 not classified & original description: pacid=50607399... 0.03 OrthoFinder output from all 47 species
Ceric.38G010000.1 RPOC1, Ceric.38G010000 core component *(RpoC1) of plastid-encoded RNA... 0.08 OrthoFinder output from all 47 species
Gb_39909 RPOC1 RpoC1 core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
LOC_Os02g24614.1 RPOC1, LOC_Os02g24614 RpoC1 core component plastid-encoded RNA polymerase 0.13 OrthoFinder output from all 47 species
Len_g58564 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.05 OrthoFinder output from all 47 species
Mp4g02290.1 RPOC1 DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.04 OrthoFinder output from all 47 species
Nbi_g14005 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.1 OrthoFinder output from all 47 species
Pir_g09480 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.14 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027469 No alias not classified & original description: CDS=1-663 0.15 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027470 RPOC1 not classified & original description: CDS=1-777 0.16 OrthoFinder output from all 47 species
Sam_g03396 No alias core component *(RpoC1) of plastid-encoded RNA... 0.09 OrthoFinder output from all 47 species
Solyc01g017370.2.1 RPOC1, Solyc01g017370 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.19 OrthoFinder output from all 47 species
Solyc01g017470.3.1 RPOC1, Solyc01g017470 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.25 OrthoFinder output from all 47 species
Solyc08g014390.1.1 RPOC1, Solyc08g014390 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Solyc12g062580.1.1 RPOC1, Solyc12g062580 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity TAS Interproscan
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription elongation RCA Interproscan
BP GO:0006354 DNA-templated transcription elongation TAS Interproscan
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009507 chloroplast TAS Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000311 plastid large ribosomal subunit IEP HCCA
CC GO:0000312 plastid small ribosomal subunit IEP HCCA
CC GO:0000314 organellar small ribosomal subunit IEP HCCA
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003959 NADPH dehydrogenase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006175 dATP biosynthetic process IEP HCCA
BP GO:0006176 dATP biosynthetic process from ADP IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009151 purine deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009153 purine deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009202 deoxyribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009215 purine deoxyribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009216 purine deoxyribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0009265 2'-deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009544 chloroplast ATP synthase complex IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0009773 photosynthetic electron transport in photosystem I IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
CC GO:0010287 plastoglobule IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019692 deoxyribose phosphate metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity IEP HCCA
BP GO:0046060 dATP metabolic process IEP HCCA
BP GO:0046385 deoxyribose phosphate biosynthetic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0048564 photosystem I assembly IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098807 chloroplast thylakoid membrane protein complex IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 430 513
IPR000722 RNA_pol_asu 373 421
IPR007080 RNA_pol_Rpb1_1 8 371
No external refs found!