ATCG00360 (YCF3)

Aliases : YCF3

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0006366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006366_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00360
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
Aev_g34996	YCF3	protein involved in PS-I assembly *(YCF3) & original...	0.17	OrthoFinder output from all 47 species
Als_g33718	YCF3	protein involved in PS-I assembly *(YCF3) & original...	0.05	OrthoFinder output from all 47 species
Cba_g70304	YCF3	protein involved in PS-I assembly *(YCF3) & original...	0.06	OrthoFinder output from all 47 species
Ceric.02G013500.1	YCF3, Ceric.02G013500	protein involved in PS-I assembly *(YCF3) & original...	0.04	OrthoFinder output from all 47 species
Ceric.09G047900.1	YCF3, Ceric.09G047900	protein involved in PS-I assembly *(YCF3) & original...	0.09	OrthoFinder output from all 47 species
Ceric.1Z022600.1	YCF3, Ceric.1Z022600	protein involved in PS-I assembly *(YCF3) & original...	0.13	OrthoFinder output from all 47 species
Ceric.1Z161500.1	YCF3, Ceric.1Z161500	not classified & original description: pacid=50596948...	0.04	OrthoFinder output from all 47 species
Ceric.26G038300.1	YCF3, Ceric.26G038300	not classified & original description: pacid=50599550...	0.11	OrthoFinder output from all 47 species
Ceric.28G030600.1	YCF3, Ceric.28G030600	not classified & original description: pacid=50569577...	0.04	OrthoFinder output from all 47 species
Ceric.29G032800.1	YCF3, Ceric.29G032800	protein involved in PS-I assembly *(YCF3) & original...	0.16	OrthoFinder output from all 47 species
Ceric.31G008800.1	Ceric.31G008800	not classified & original description: pacid=50574640...	0.04	OrthoFinder output from all 47 species
Ceric.36G045200.1	YCF3, Ceric.36G045200	not classified & original description: pacid=50568804...	0.01	OrthoFinder output from all 47 species
GSVIVT01016018001	No alias	Photosystem I assembly protein Ycf3 OS=Nicotiana tabacum	0.05	OrthoFinder output from all 47 species
LOC_Os01g57966.1	YCF3, LOC_Os01g57966	YCF3 protein involved in PS-I assembly	0.15	OrthoFinder output from all 47 species
LOC_Os04g16736.1	YCF3, LOC_Os04g16736	YCF3 protein involved in PS-I assembly	0.15	OrthoFinder output from all 47 species
LOC_Os04g16762.1	YCF3, LOC_Os04g16762	YCF3 protein involved in PS-I assembly	0.06	OrthoFinder output from all 47 species
LOC_Os10g21254.1	YCF3, LOC_Os10g21254	YCF3 protein involved in PS-I assembly	0.15	OrthoFinder output from all 47 species
LOC_Os10g38216.1	YCF3, LOC_Os10g38216	YCF3 protein involved in PS-I assembly	0.15	OrthoFinder output from all 47 species
Lfl_g14015	YCF3	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Lfl_g19607	YCF3	protein involved in PS-I assembly *(YCF3) & original...	0.08	OrthoFinder output from all 47 species
Ore_g20105	YCF3	protein involved in PS-I assembly *(YCF3) & original...	0.07	OrthoFinder output from all 47 species
Pir_g08805	YCF3	protein involved in PS-I assembly *(YCF3) & original...	0.04	OrthoFinder output from all 47 species
Sam_g21679	No alias	protein involved in PS-I assembly *(YCF3) & original...	0.04	OrthoFinder output from all 47 species
Solyc00g500058.1.1	YCF3, Solyc00g500058	YCF3 protein involved in PS-I assembly	0.11	OrthoFinder output from all 47 species
Solyc00g500059.1.1	Solyc00g500059	Photosystem I assembly protein Ycf3 OS=Solanum...	0.13	OrthoFinder output from all 47 species
Solyc00g500144.1.1	Solyc00g500144	Photosystem I assembly protein Ycf3 OS=Solanum...	0.13	OrthoFinder output from all 47 species
Solyc00g500210.1.1	YCF3, Solyc00g500210	YCF3 protein involved in PS-I assembly	0.11	OrthoFinder output from all 47 species
Solyc00g500211.1.1	Solyc00g500211	Photosystem I assembly protein Ycf3 OS=Solanum...	0.13	OrthoFinder output from all 47 species
Solyc09g015280.1.1	YCF3, Solyc09g015280	Photosystem I assembly protein Ycf3 OS=Solanum...	0.06	OrthoFinder output from all 47 species
Solyc09g015320.3.1	PSAA, Solyc09g015320	Photosystem I P700 chlorophyll a apoprotein A1...	0.09	OrthoFinder output from all 47 species
Spa_g00949	YCF3	protein involved in PS-I assembly *(YCF3) & original...	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009507	chloroplast	TAS	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048564	photosystem I assembly	TAS	Interproscan
MF	GO:0051082	unfolded protein binding	TAS	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000312	plastid small ribosomal subunit	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
CC	GO:0009368	endopeptidase Clp complex	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009533	chloroplast stromal thylakoid	IEP	HCCA
CC	GO:0009534	chloroplast thylakoid	IEP	HCCA
CC	GO:0009535	chloroplast thylakoid membrane	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0031976	plastid thylakoid	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
CC	GO:0042170	plastid membrane	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
CC	GO:0055035	plastid thylakoid membrane	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001440	TPR_1	31	61

External Links

No external refs found!

ATCG00360 (YCF3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation