ATCG00670 (CLPP1, PCLPP)

Aliases : CLPP1, PCLPP

Description : plastid-encoded CLP P

Gene families : OG0005638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005638_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00670
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00125230	evm_27.TU.AmTr_v1...	ATP-dependent Clp protease proteolytic subunit...	0.12	OrthoFinder output from all 47 species
Aev_g08306	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.3	OrthoFinder output from all 47 species
Als_g53570	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.06	OrthoFinder output from all 47 species
Aob_g33780	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.15	OrthoFinder output from all 47 species
Aop_g02469	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.07	OrthoFinder output from all 47 species
Cba_g08794	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.1	OrthoFinder output from all 47 species
Ceric.05G041300.1	CLPP1, PCLPP,...	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.22	OrthoFinder output from all 47 species
Ceric.05G051000.1	CLPP1, PCLPP,...	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.2	OrthoFinder output from all 47 species
Ceric.17G015900.1	CLPP1, PCLPP,...	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.14	OrthoFinder output from all 47 species
Ceric.19G010300.1	CLPP1, PCLPP,...	not classified & original description: pacid=50576599...	0.19	OrthoFinder output from all 47 species
Ceric.1Z021300.1	CLPP1, PCLPP,...	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.29	OrthoFinder output from all 47 species
Ceric.1Z162700.1	CLPP1, PCLPP,...	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.07	OrthoFinder output from all 47 species
Ceric.38G007900.1	CLPP1, PCLPP,...	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.22	OrthoFinder output from all 47 species
Dde_g22724	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
LOC_Os06g39712.1	CLPP1, PCLPP,...	proteolytic core component ClpP1/3-6 of chloroplast...	0.04	OrthoFinder output from all 47 species
LOC_Os08g15270.1	CLPP1, PCLPP,...	proteolytic core component ClpP1/3-6 of chloroplast...	0.4	OrthoFinder output from all 47 species
LOC_Os10g21300.1	CLPP1, PCLPP,...	ATP-dependent Clp protease proteolytic subunit OS=Oryza...	0.15	OrthoFinder output from all 47 species
LOC_Os12g10590.1	CLPP1, PCLPP,...	ATP-dependent Clp protease proteolytic subunit OS=Oryza...	0.02	OrthoFinder output from all 47 species
Lfl_g19263	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.12	OrthoFinder output from all 47 species
Mpzg01030.3	CLPP1, PCLPP	proteolytic core component ClpP1/3-6 of chloroplast...	0.09	OrthoFinder output from all 47 species
Nbi_g10955	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.16	OrthoFinder output from all 47 species
Ore_g40632	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.11	OrthoFinder output from all 47 species
Pir_g07483	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.15	OrthoFinder output from all 47 species
Pnu_g10170	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Ppi_g33472	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Sam_g03253	No alias	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.1	OrthoFinder output from all 47 species
Smo137715	CLPP1, PCLPP	Protein degradation.peptidase families.serine-type...	0.06	OrthoFinder output from all 47 species
Solyc00g500023.1.1	CLPP1, PCLPP,...	ATP-dependent Clp protease proteolytic subunit...	0.09	OrthoFinder output from all 47 species
Spa_g05341	CLPP1, PCLPP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.07	OrthoFinder output from all 47 species
Tin_g09204	CLPP1, PCLPP	EC_3.4 hydrolase acTing on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Zm00001e003904_P001	CLPP1, PCLPP,...	ATP-dependent Clp protease proteolytic subunit OS=Zea...	0.03	OrthoFinder output from all 47 species
Zm00001e042026_P001	CLPP1, PCLPP,...	ATP-dependent Clp protease proteolytic subunit OS=Zea...	0.03	OrthoFinder output from all 47 species
Zm00001e042065_P001	CLPP1, PCLPP,...	ATP-dependent Clp protease proteolytic subunit OS=Zea...	0.03	OrthoFinder output from all 47 species
Zm00001e042085_P001	CLPP1, PCLPP,...	proteolytic core component ClpP1/3-6 of chloroplast...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006508	proteolysis	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	TAS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009368	endopeptidase Clp complex	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IDA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
CC	GO:0000312	plastid small ribosomal subunit	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
CC	GO:0005753	mitochondrial proton-transporting ATP synthase complex	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009329	acetate CoA-transferase complex	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009533	chloroplast stromal thylakoid	IEP	HCCA
CC	GO:0009534	chloroplast thylakoid	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016421	CoA carboxylase activity	IEP	HCCA
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
CC	GO:0031976	plastid thylakoid	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0048564	photosystem I assembly	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023562	ClpP/TepA	17	194

External Links

No external refs found!

ATCG00670 (CLPP1, PCLPP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation