ATCG00790 (RPL16)

Aliases : RPL16

Description : ribosomal protein L16

Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00790
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s02809p00000680	evm_27.TU.AmTr_v1...	50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda	0.08	OrthoFinder output from all 47 species
ATMG00080	RPL16	ribosomal protein L16	0.06	OrthoFinder output from all 47 species
Aob_g00484	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aob_g10973	RPL16	component *(uL16m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g00855	RPL16	component *(uL16m) of large mitoribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.05G042300.1	RPL16, Ceric.05G042300	component *(uL16c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ceric.05G052200.1	RPL16, Ceric.05G052200	not classified & original description: pacid=50577977...	0.15	OrthoFinder output from all 47 species
Ceric.1Z020000.1	RPL16, Ceric.1Z020000	not classified & original description: pacid=50586397...	0.05	OrthoFinder output from all 47 species
Ceric.29G004300.1	RPL16, Ceric.29G004300	not classified & original description: pacid=50624823...	0.09	OrthoFinder output from all 47 species
Ceric.35G023300.1	RPL16, Ceric.35G023300	not classified & original description: pacid=50581973...	0.04	OrthoFinder output from all 47 species
Ceric.38G009100.1	RPL16, Ceric.38G009100	component *(uL16c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Cre06.g278224	No alias	60S ribosomal protein L16, mitochondrial OS=Prototheca...	0.03	OrthoFinder output from all 47 species
Gb_05912	RPL16	component mtRPL16 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Gb_40955	RPL16	50S ribosomal protein L16, chloroplastic...	0.03	OrthoFinder output from all 47 species
LOC_Os01g57958.1	LOC_Os01g57958	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.12	OrthoFinder output from all 47 species
LOC_Os04g16826.1	LOC_Os04g16826	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.11	OrthoFinder output from all 47 species
LOC_Os10g21344.1	LOC_Os10g21344	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.11	OrthoFinder output from all 47 species
LOC_Os12g34128.1	LOC_Os12g34128	component mtRPL16 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Mp1g22400.1	No alias	60S ribosomal protein L16, mitochondrial OS=Marchantia...	0.07	OrthoFinder output from all 47 species
Ore_g00369	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.19	OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023360	RPL16	not classified & original description: CDS=1-189	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028729	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028812	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sam_g33347	No alias	component *(uL16m) of large mitoribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Smo137887	RPL16	50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula	0.08	OrthoFinder output from all 47 species
Solyc00g500032.1.1	RPL16, Solyc00g500032	50S ribosomal protein L16, chloroplastic OS=Atropa...	0.09	OrthoFinder output from all 47 species
Solyc00g500077.1.1	RPL16, Solyc00g500077	50S ribosomal protein L16, chloroplastic OS=Atropa...	0.09	OrthoFinder output from all 47 species
Solyc00g500245.1.1	Solyc00g500245	component mtRPL16 of large ribosomal subunit proteome....	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	TAS	Interproscan
CC	GO:0000315	organellar large ribosomal subunit	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	TAS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006412	translation	TAS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
CC	GO:0000312	plastid small ribosomal subunit	IEP	HCCA
CC	GO:0000313	organellar ribosome	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
MF	GO:0003951	NAD+ kinase activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
CC	GO:0005754	mitochondrial proton-transporting ATP synthase, catalytic core	IEP	HCCA
BP	GO:0005983	starch catabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006741	NADP biosynthetic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009251	glucan catabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009528	plastid inner membrane	IEP	HCCA
CC	GO:0009534	chloroplast thylakoid	IEP	HCCA
CC	GO:0009535	chloroplast thylakoid membrane	IEP	HCCA
CC	GO:0009544	chloroplast ATP synthase complex	IEP	HCCA
CC	GO:0009547	plastid ribosome	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009646	response to absence of light	IEP	HCCA
CC	GO:0009706	chloroplast inner membrane	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
CC	GO:0010319	stromule	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016160	amylase activity	IEP	HCCA
MF	GO:0016161	beta-amylase activity	IEP	HCCA
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	HCCA
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	HCCA
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0031976	plastid thylakoid	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
CC	GO:0042170	plastid membrane	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
MF	GO:0042736	NADH kinase activity	IEP	HCCA
BP	GO:0042776	proton motive force-driven mitochondrial ATP synthesis	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	HCCA
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	HCCA
BP	GO:0045037	protein import into chloroplast stroma	IEP	HCCA
MF	GO:0045157	electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	IEP	HCCA
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	HCCA
CC	GO:0045267	proton-transporting ATP synthase, catalytic core	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
CC	GO:0055035	plastid thylakoid membrane	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	4	132

External Links

No external refs found!

ATCG00790 (RPL16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation